Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48090 145 / 5e-40 ELP1 EDM2-like protein1 (.1.2) AT5G55390 133 / 2e-35 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001729 [exp] 289 / 1e-90 AT5G55390 622 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10023353 [exp] 134 / 2e-35 AT5G55390 890 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359900 [exp] 144 / 2e-39 AT5G55390 915 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Potri.014G163301 [exp] 51 / 2e-08 AT5G55390 56 / 2e-10 ENHANCED DOWNY MILDEW 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002268 pacid=23153452 polypeptide=Lus10002268 locus=Lus10002268.g ID=Lus10002268.BGIv1.0 annot-version=v1.0 ATGGGACTAAATCCACCATTTGGGTTCAAGGCTCACCTTGCTAATGAGTTCATCAAGCAAGCTCTCAAGTTCAGACCAAAGCTCCTTATCCTCATCGTCC CCAAGGAGACCAAAAGAGTTGATGCAGTGGGACCGTACAACTTAATCTGGGAAGATGATCAGTTGCTCGCCGGCAAGTCATTTTATCTACCTGGATCAGT TGACGTGGACAACAAGCGACTGGAAGGCTGGAACAAAAGCACACCTCCCTTGTCTCTCTGGAGCCGCTCCAACTGGACGGGCACCCACTTGGAAATCGCC CGGAAAGTCAGCACCGGCGAACTACCCGCCACTGATGAAGAAAACCATCCAGTTCGACACGTAGCTGTTGGTGATCCCCATCCTGAGGCATCTTCTCCGG GAAGCAACCACAGCGCTAGATGCTCATCAGAACTTAGCGGTGAGTCCTCCGGTGGTACTTTCCACGACGGCAACGAGGACGAGGACGAAAGCTTCCTGCA GCCACCGGATCAGAGCACATTTCTGCAGCAAGCTCCTGCTAATTACTCAGATTCCGACGACTCAGTACTGCCTCCTCCTCCTCCTCCGCCGCCACCAGAG TTTGATCTCCCTCCCCAGCCGCTACCGCCGCCGCCACCACCTCCTCCGATGTGTTACCGTTCCGGCGACTTCTCCTTCGTGCAGAGGCCGCTGCAGAGTA CTCCAATGGGGTATTATTGGGGACCGTAA
AA sequence Show only first row Show all	>Lus10002268 pacid=23153452 polypeptide=Lus10002268 locus=Lus10002268.g ID=Lus10002268.BGIv1.0 annot-version=v1.0 MGLNPPFGFKAHLANEFIKQALKFRPKLLILIVPKETKRVDAVGPYNLIWEDDQLLAGKSFYLPGSVDVDNKRLEGWNKSTPPLSLWSRSNWTGTHLEIA RKVSTGELPATDEENHPVRHVAVGDPHPEASSPGSNHSARCSSELSGESSGGTFHDGNEDEDESFLQPPDQSTFLQQAPANYSDSDDSVLPPPPPPPPPE FDLPPQPLPPPPPPPPMCYRSGDFSFVQRPLQSTPMGYYWGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	0	1
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	1.4	0.9898
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10008092 [exp]	2.0	0.9821
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	3.9	0.9808
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	4.0	0.9845
					Lus10000191 [exp]	4.2	0.9765
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	4.9	0.9794
					Lus10007549 [exp]	5.5	0.9837
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	7.7	0.9750
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	7.9	0.9781
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	9.8	0.9777

Compare expression of checked genes

Lus10002268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.