Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55390 175 / 4e-50 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) AT5G48090 136 / 7e-37 ELP1 EDM2-like protein1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001729 [exp] 330 / 2e-106 AT5G55390 622 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10023353 [exp] 184 / 2e-53 AT5G55390 890 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10038454 [exp] 92 / 4e-21 AT5G55390 184 / 7e-50 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10020204 [exp] 82 / 4e-20 ND / Lus10006458 [exp] 75 / 7e-17 ND 37 / 0.003
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359900 [exp] 179 / 9e-52 AT5G55390 915 / 0.0 ENHANCED DOWNY MILDEW 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002269 pacid=23153447 polypeptide=Lus10002269 locus=Lus10002269.g ID=Lus10002269.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTGATGGAAGACTCGGCTGCTGAGTATGAGATAGAGAAGGCCAAGATTTTGGAGAGAGCCCGTGAGGCTGGACATCACGGTCGCACCACCG GATTCGCCAAGGCTCTCACGTTTGGATGCATTGAGAACTATGTCCAGGCTGTTCGTACCGCTAAAGAATCTCTAGATAACAAGATATCTGTTGGTGAACA GAACCCGAAACCAATGTTTGCGTTGCAGGCTGTTCGTACCGCTAAAGAATCTCTAGATAACAACGGCAGTATTGACAACGCTCTAGCTGTTTGCCCAAAA GAGACTCTGACCAGTCTATACCAATGGGAGGAAAAACTCGATGGCTACCTTACACCTTTCGTCCAGGGAATGCGATACACTTCCTTCGACCGACATTTCA CCAAAACAGACAAGCTCGAGGAGATTGTGAACCGGCTTCATTCATATGTCCGTCCTGGTGACATGATAGTCGACTTCTGCTGCGGGTCTAACGATTTCAG TCTGATGATGAAGGCGAAGCTAGATGCAGTCGGGAAATCATGCCTTTTCAAAAACTACGACATCATCCAAACAAAAAATGACTTCTTCTTCGAGAAGAGG AACTGGATGCATGTGAAGCCTAATGAGCTACCTACCAGATGGGTCACGCCTGGTAACGATACTTCGATACCCACTTGA
AA sequence Show only first row Show all	>Lus10002269 pacid=23153447 polypeptide=Lus10002269 locus=Lus10002269.g ID=Lus10002269.BGIv1.0 annot-version=v1.0 MKKLMEDSAAEYEIEKAKILERAREAGHHGRTTGFAKALTFGCIENYVQAVRTAKESLDNKISVGEQNPKPMFALQAVRTAKESLDNNGSIDNALAVCPK ETLTSLYQWEEKLDGYLTPFVQGMRYTSFDRHFTKTDKLEEIVNRLHSYVRPGDMIVDFCCGSNDFSLMMKAKLDAVGKSCLFKNYDIIQTKNDFFFEKR NWMHVKPNELPTRWVTPGNDTSIPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	2.0	0.9624
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	2.4	0.9652
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10014316 [exp]	3.7	0.9478
					Lus10010102 [exp]	6.8	0.8896
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	7.1	0.9555
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	7.7	0.9544
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	8.8	0.9467
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10018657 [exp]	9.4	0.9155
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	9.8	0.9485
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	10.4	0.9471

Compare expression of checked genes

Lus10002269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.