Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001731 [exp] 87 / 2e-21 ND / Lus10012353 [exp] 40 / 0.0005 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002271 pacid=23153441 polypeptide=Lus10002271 locus=Lus10002271.g ID=Lus10002271.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTTGAGGTTGTCTCAGCTCAGACCGCATTCCAAGAGGAGAAGCCCGATGAGGTCATAACACAGCCGCCGAAGGCGGTGGTCGCCGAGTCCG AGACAGCTCCTCCTCCTTCTACTACTACTACTACTACTACTACTACTACAGAGGGGCCGAAAGAGAAGGCGGAAGAAGACAACAACACCACCGCCGCCAC CGTGGAAGGTGATCACGTGGTTCCGGCGGCGGAGAAAGTGGAAGTGGAGATAGTAGTGGTCGAGACTGAGAAAGCTGACGACGTGGAGCCTCCGGTGGTA TCCGAAGGAGGAGGAGAAGTCACCGCCGACGTCGTCAAGGAAGAGCAAGAAGAGTTAAAGGATTATGATCAGGAGAAAACGGAAGAAGATCATAGCGCTA CTACTGATCAGAAAGAAGCTGATGATCATGCAACTGCGGAGGTGGCGGAGGAAAAAGTCAGCAACGTGGATGTGGGCCGCGATCCTGCTGCCACGGTGGC AGTACCGGAGCCAGCTGAGACTGCTGATGTGGAAGAGAGCAAGGATGTGAAGAAGGCTGAGTGA
AA sequence Show only first row Show all	>Lus10002271 pacid=23153441 polypeptide=Lus10002271 locus=Lus10002271.g ID=Lus10002271.BGIv1.0 annot-version=v1.0 MAAVEVVSAQTAFQEEKPDEVITQPPKAVVAESETAPPPSTTTTTTTTTTEGPKEKAEEDNNTTAATVEGDHVVPAAEKVEVEIVVVETEKADDVEPPVV SEGGGEVTADVVKEEQEELKDYDQEKTEEDHSATTDQKEADDHATAEVAEEKVSNVDVGRDPAATVAVPEPAETADVEESKDVKKAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002271 [exp]	0	1
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	3.9	0.7487
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	4.7	0.7464
AT4G24900			unknown protein		Lus10024906 [exp]	4.7	0.6863
AT5G44450			methyltransferases (.1)		Lus10042846 [exp]	6.0	0.6477
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	7.7	0.7251
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	15.2	0.6712
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	16.2	0.6981
AT3G60480			unknown protein		Lus10000560 [exp]	29.1	0.7122
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	31.8	0.6637
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	31.9	0.6719

Compare expression of checked genes

Lus10002271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.