Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04780 209 / 2e-67 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT5G60490 87 / 3e-20 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 85 / 2e-19 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT2G20520 84 / 4e-19 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G44130 81 / 5e-18 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 81 / 5e-18 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT3G46550 72 / 3e-14 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT3G60900 67 / 2e-12 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 62 / 7e-11 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G12730 59 / 1e-09 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001733 [exp] 376 / 8e-133 AT2G04780 231 / 4e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10012351 [exp] 244 / 1e-80 AT2G04780 223 / 9e-73 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10006399 [exp] 243 / 2e-80 AT2G04780 226 / 9e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10033651 [exp] 91 / 2e-21 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10017696 [exp] 88 / 2e-20 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10036114 [exp] 85 / 3e-19 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 84 / 4e-19 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 82 / 2e-18 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10009235 [exp] 80 / 6e-17 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223300 [exp] 216 / 9e-70 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.014G162900 [exp] 214 / 4e-69 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G120600 [exp] 95 / 2e-23 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.001G320800 [exp] 89 / 8e-21 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.016G088700 [exp] 87 / 4e-20 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.006G129200 [exp] 86 / 5e-20 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.012G015032 [exp] 86 / 8e-20 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G014966 [exp] 86 / 8e-20 AT5G60490 179 / 1e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G093300 [exp] 85 / 2e-19 AT5G44130 173 / 9e-54 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.015G129400 [exp] 85 / 2e-19 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10002273 pacid=23153433 polypeptide=Lus10002273 locus=Lus10002273.g ID=Lus10002273.BGIv1.0 annot-version=v1.0 ATGGAGTTCTTCTCCACCACCACAGTGCTTCTAATCCTTGTAGCTTCTCTTAGTGAAGCTGCTCACCACAGTCCACCAGCTCCAATGGCGTTCACACCAT CACCAGCTCCAGCTCCAGCTCCAGCATCACCCTATGTGAACCTCACAGACTTGCTCTCAGTAGCAGGACCATTCCACACATTCCTAGACTACCTCCAATC GACCAAAGTAATCGATACATTCCAGGACCAGGCCAACAAAACCCACCAAGGAATCACCCTATTCGTCCCCAAAGACTCTGCCTTTTCGGCCATCAACAAG CCTCCATATCCTTCACTATCCAATATCACTTCAGCACAGCTGAAGCAGGTGATGCTGTTCCACGGATTGCCACATTTCTACACTTTTGCTGACTTCAAGA ACCTCAGCGAGTCCGGTCCGGTGCCTACATTTGCAGGAGCTGGACAGTTTGCTCTGAACTTCACCTATCTGTCTGGATTGGTTCGGATCGATTCGGGTTG GAGCAAGACTAAAGTGAGCAGTAGTGTGCATTCCACTGACCCTGTTGCTGTGTACCAAGTTGATAAGGTTCTATTACCTGAGGCTGTTTTTGGGACTGAT ATCCCTCCAATGCCTGCTCCTGCTCCGGCTCCCGAGGCAAGTGTTGCTCCGGCTGCCGCGGATGCTCCCTCTGCCGATGCTACTGCTGCTTTGGGAGGGA AAAATCCTGGGAGGAAAGCTGCATCAAATTCTGGTAATGGGATTCATGCTCATGGGTTTGGGGCGGTGTTGGGTTTTTGTGGTGTAGTTATGTTGTTGTG A
AA sequence Show only first row Show all	>Lus10002273 pacid=23153433 polypeptide=Lus10002273 locus=Lus10002273.g ID=Lus10002273.BGIv1.0 annot-version=v1.0 MEFFSTTTVLLILVASLSEAAHHSPPAPMAFTPSPAPAPAPASPYVNLTDLLSVAGPFHTFLDYLQSTKVIDTFQDQANKTHQGITLFVPKDSAFSAINK PPYPSLSNITSAQLKQVMLFHGLPHFYTFADFKNLSESGPVPTFAGAGQFALNFTYLSGLVRIDSGWSKTKVSSSVHSTDPVAVYQVDKVLLPEAVFGTD IPPMPAPAPAPEASVAPAAADAPSADATAALGGKNPGRKAASNSGNGIHAHGFGAVLGFCGVVMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	0	1
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	1.7	0.8527
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	2.4	0.8680
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	5.5	0.8426
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	6.2	0.8554
AT5G25510			Protein phosphatase 2A regulat...		Lus10017752 [exp]	6.5	0.8385
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	11.5	0.8184
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	12.8	0.8292
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	13.0	0.8326
AT1G35780			unknown protein		Lus10020921 [exp]	13.7	0.8338
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	14.5	0.8320

Compare expression of checked genes

Lus10002273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.