Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 415 / 3e-144 Auxin-responsive family protein (.1) AT5G35735 407 / 7e-141 Auxin-responsive family protein (.1) AT4G17280 399 / 9e-138 Auxin-responsive family protein (.1) AT3G25290 377 / 4e-129 Auxin-responsive family protein (.1.2) AT4G12980 355 / 2e-120 Auxin-responsive family protein (.1) AT3G59070 275 / 2e-88 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 203 / 2e-61 Auxin-responsive family protein (.1) AT5G48750 178 / 2e-53 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 127 / 3e-33 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07390 103 / 2e-25 AIR12 Auxin-Induced in Root cultures 12, auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001734 [exp] 694 / 0 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10012350 [exp] 608 / 0 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10017564 [exp] 365 / 2e-124 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 355 / 5e-120 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10006398 [exp] 341 / 1e-116 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10025877 [exp] 283 / 2e-93 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 240 / 4e-78 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10001162 [exp] 225 / 1e-69 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 221 / 2e-68 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222700 [exp] 459 / 1e-161 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 456 / 3e-160 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 437 / 4e-153 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 428 / 2e-149 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 425 / 4e-148 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 404 / 8e-140 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 360 / 2e-122 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.001G031600 [exp] 321 / 3e-107 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 316 / 3e-105 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 314 / 2e-104 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [flax] [poplar] PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10002274 pacid=23153430 polypeptide=Lus10002274 locus=Lus10002274.g ID=Lus10002274.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTTCACAGAACACTAACCCTCTCCGCGATTCTCATCCTCTCCTTGTTTTCTTCTCAATCAAATGCCCAAACTTGCAACAGACAAACCTTCT CAGCCAACCAGGTCTACTCAACCTGCGTAGATCTCCCAGCACTAACCTCATTCCTCCACTGGAACTTCCACCAATCCAACAACACAGCGGACATTGCCTT CAGAAGAACCGGAACCACACCTTCCAGATGGGTCTGCTGGGCTCTGAATCCGTCCGGCGCCGGGATGGTGGGTTCGCAGGCGTTGATCGCCTATCAGCTC CCCAATGGGTCGATGAATGTTTACACGAGCAGCATTGATTCAATGGGCCCGTCCATGGCTCCAGGGGGATTGAGTTTCCGTGTGGCGAATCTTAGAGCTG AGCATTCGAGTAGGGAGACGTCGATTTTCGCTACTTTGCATTTGGATGCGAATCTGCTGTCGACGAATCAGGTTTGGCAGGAAGGTCCTCTGGTTGGTGG AGGTCCTTCGATTCATCCCACTAGTGGGGATAATCTTAGATCGGTTGGGACTATTGATTTCCAGACTGGTGCCACTTCTGCTGGCAGTGGTGGTGCTACC AACTCAAGGCTCCGCAAGAGGAATATTCATGGAATTTTGAATGCAGTGAGTTGGGGGATTCTGATGCCAATAGGAGCCATCATAGCAAGGTACTTGAAGG CGTTCAAGTCAGCAAACCCAGCATGGTTCTACCTGCATGTTGCTTGCCAATTGTCTGCTTATATCGTCGGTGTGGCTGGCTGGGGAACCGGTCTCAAACT CGGCAGTGAAAGCGCTGGAATCCAGTACAACAAGCATAGGAACATTGGCATCACCCTCTTCTGCTTTGGCACACTTCAGGCATTTGCCTTGCTTCTGAGG CCAAAGCCAGACCACAAGTACAGAGTATACTGGAATATTTACCACCACTCCATCGGGTACGCGACCATCAGCCTGAGCATTGCCAACATCTACGTGGGGC TTGACATCCTCAACCCGGAAAACAAGTGGAAGAGAGCTTACACTGCTGTCATCATTGTGCTGGGAGCCATTGCTCTGGTTTTGGAAGCTGTGACGTGGCT CATTGTCATCAAGAGAAAGCAGGCTGTTACAGCTGCTGATAAGCATGGCAATGGACATGACCACAGGACACATCAGAATGCCTAA
AA sequence Show only first row Show all	>Lus10002274 pacid=23153430 polypeptide=Lus10002274 locus=Lus10002274.g ID=Lus10002274.BGIv1.0 annot-version=v1.0 MEKLHRTLTLSAILILSLFSSQSNAQTCNRQTFSANQVYSTCVDLPALTSFLHWNFHQSNNTADIAFRRTGTTPSRWVCWALNPSGAGMVGSQALIAYQL PNGSMNVYTSSIDSMGPSMAPGGLSFRVANLRAEHSSRETSIFATLHLDANLLSTNQVWQEGPLVGGGPSIHPTSGDNLRSVGTIDFQTGATSAGSGGAT NSRLRKRNIHGILNAVSWGILMPIGAIIARYLKAFKSANPAWFYLHVACQLSAYIVGVAGWGTGLKLGSESAGIQYNKHRNIGITLFCFGTLQAFALLLR PKPDHKYRVYWNIYHHSIGYATISLSIANIYVGLDILNPENKWKRAYTAVIIVLGAIALVLEAVTWLIVIKRKQAVTAADKHGNGHDHRTHQNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47530			Auxin-responsive family protei...		Lus10002274 [exp]	0	1
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	5.8	0.9525
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	6.7	0.9442
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	7.3	0.9488
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	11.0	0.9439
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	14.1	0.9396
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	14.5	0.9427
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	14.9	0.9412
AT5G46220			Protein of unknown function (D...		Lus10038497 [exp]	20.0	0.9135
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	21.3	0.9399
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	21.4	0.9322

Compare expression of checked genes

Lus10002274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.