Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 148 / 5e-40 Eukaryotic aspartyl protease family protein (.1) AT4G30040 137 / 3e-36 Eukaryotic aspartyl protease family protein (.1) AT4G30030 130 / 2e-33 Eukaryotic aspartyl protease family protein (.1) AT1G64830 114 / 7e-28 Eukaryotic aspartyl protease family protein (.1) AT5G33340 97 / 1e-21 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G35615 91 / 1e-19 Eukaryotic aspartyl protease family protein (.1) AT3G12700 89 / 4e-19 Eukaryotic aspartyl protease family protein (.1.2) AT3G25700 89 / 4e-19 Eukaryotic aspartyl protease family protein (.1.2) AT2G28040 87 / 1e-18 Eukaryotic aspartyl protease family protein (.1) AT2G17760 86 / 8e-18 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002276 [exp] 540 / 0 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 360 / 2e-118 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 313 / 6e-102 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 256 / 8e-81 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 249 / 4e-78 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 244 / 2e-76 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 213 / 2e-64 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 178 / 3e-51 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10015487 [exp] 147 / 8e-40 AT2G23945 214 / 7e-65 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 181 / 3e-52 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 127 / 7e-33 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 97 / 9e-22 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 94 / 1e-20 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 86 / 7e-18 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 82 / 9e-17 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 82 / 9e-17 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 82 / 1e-16 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 82 / 1e-16 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 81 / 3e-16 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10002275 pacid=23171929 polypeptide=Lus10002275 locus=Lus10002275.g ID=Lus10002275.BGIv1.0 annot-version=v1.0 ATGGCGAAAACCACACCTCTCAACCTCGTCACTCTCGTCTTCCTCATCCTCCTCTGCTTCTCCGATGGCTTGAAAATCACTACGCGACTTATCCACCGCG ATTCTATCTTTTCCCCCCAATTCAATGCCTCCCTGACCACTACCGATCTTGCCAAGAGGATGGTGGGAGCCTCGCTCACTCGCCACTCGGCCTCTATCCT CCTCCGGTCGTCCGATGATGATGAGGTGGATGGCATCACGCCTGGGTTGCTATGGGGGAAGGACAAAATCCACGTTGTGTTCTACGTCAACTTCTCGATC GGCACTCCTCCTGTTCCGCAACTGGCAGTGCTGGACACGGGCAGTAGCATGTTGTGGGTTAGGTGCCCACCTTGCACTCCTCATTGCTACTCCGGATCGA GAGCTACATACTTTTTTCAATCCGACTCCAAAACTTACTCTTTGGTCCCGTGTACTAAAGAATGTACCAAGTGTAGTCCAGGGCGATGGCCGTGGTCTCC GGGCAAGGAATGCACGTACGTAATTCAATACGCGACTTCGCAAAGTATAGGAGTTTATGGCACCGACCAACTGACCTTTCGGACAAACAACGACGACACG AGAAACACCACCCTGACAAATGTGTTGTTCGGGTGCAGTCAGGTGGAGACCGGACGAAATGATGTCGAACCGTCTGCCAACGGAGTTATCGGGTTGGGGA ATAGAGTTGCTCCAGGTACGCCTAAAGATCATGGCCCTTTGGTCAACATGTTGGGTGGGAAATTCTCCTACTGCGTAGGCAGCACCTCCAACGGCTCTTA CCCTCACAACAGCTTGTCTTTCGGCGACGCTGCTAACTTCCTCGGCAAATCCACTCCCTTAATTCACACCGTCGATGGCTATTACTTCATGAACATCAAC AACATCAGCATCGGAGGCAACCAGATGCTGAACATTGACTCGGATGCATTTAATCACGGAACCATGATAGAAAGTGGGTCCGAACTCACTTTACTCCGCC CCAGCGCTATTGACGCGGTGATGGCAGAGGTTAAATTGGAGGCTGAGTTGTTGAATCTCCAAGAAGTTCGTTCGCCGGCGAGGGAGTTGGAGCTCTGCTA TAGAGGAACTGTTGAAAAAGATGGAAACTCGTTTAATAATTTTAGCTTTCACTTGGATCGCGGAGCGGAGTTGACGGTGGGTAATTTTGGCATGTTCGCG CAGGTTGCCGATGACATTTTCTGTCTAGCTATTATGAGGTCGAAGACTTAA
AA sequence Show only first row Show all	>Lus10002275 pacid=23171929 polypeptide=Lus10002275 locus=Lus10002275.g ID=Lus10002275.BGIv1.0 annot-version=v1.0 MAKTTPLNLVTLVFLILLCFSDGLKITTRLIHRDSIFSPQFNASLTTTDLAKRMVGASLTRHSASILLRSSDDDEVDGITPGLLWGKDKIHVVFYVNFSI GTPPVPQLAVLDTGSSMLWVRCPPCTPHCYSGSRATYFFQSDSKTYSLVPCTKECTKCSPGRWPWSPGKECTYVIQYATSQSIGVYGTDQLTFRTNNDDT RNTTLTNVLFGCSQVETGRNDVEPSANGVIGLGNRVAPGTPKDHGPLVNMLGGKFSYCVGSTSNGSYPHNSLSFGDAANFLGKSTPLIHTVDGYYFMNIN NISIGGNQMLNIDSDAFNHGTMIESGSELTLLRPSAIDAVMAEVKLEAELLNLQEVRSPARELELCYRGTVEKDGNSFNNFSFHLDRGAELTVGNFGMFA QVADDIFCLAIMRSKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002275 [exp]	0	1
					Lus10031949 [exp]	1.0	0.8797
AT3G52740			unknown protein		Lus10022717 [exp]	5.1	0.8096
AT5G25310			Exostosin family protein (.1)		Lus10001917 [exp]	9.8	0.7036
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10019356 [exp]	11.9	0.6507
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	13.5	0.7149
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	19.1	0.7538
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	20.7	0.7543
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	22.0	0.7091
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	24.2	0.7157
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	24.3	0.7253

Compare expression of checked genes

Lus10002275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.