Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 202 / 6e-60 Eukaryotic aspartyl protease family protein (.1) AT4G30030 183 / 7e-53 Eukaryotic aspartyl protease family protein (.1) AT4G30040 177 / 2e-50 Eukaryotic aspartyl protease family protein (.1) AT5G33340 151 / 6e-41 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 132 / 6e-34 Eukaryotic aspartyl protease family protein (.1) AT4G12920 126 / 4e-32 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1) AT3G25700 125 / 1e-31 Eukaryotic aspartyl protease family protein (.1.2) AT2G35615 115 / 4e-28 Eukaryotic aspartyl protease family protein (.1) AT2G03200 111 / 2e-26 Eukaryotic aspartyl protease family protein (.1) AT2G28040 106 / 5e-25 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002275 [exp] 560 / 0 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 446 / 3e-151 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 369 / 5e-123 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 327 / 3e-108 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 324 / 1e-106 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 308 / 7e-101 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 281 / 3e-90 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 225 / 8e-69 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10015487 [exp] 195 / 2e-57 AT2G23945 214 / 7e-65 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 246 / 9e-77 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 189 / 7e-56 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 139 / 2e-36 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 129 / 6e-33 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 126 / 6e-32 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 120 / 8e-30 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 112 / 5e-27 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 107 / 3e-25 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 105 / 2e-24 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 105 / 3e-24 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10002276 pacid=23171930 polypeptide=Lus10002276 locus=Lus10002276.g ID=Lus10002276.BGIv1.0 annot-version=v1.0 ATGGCAAAAAACACACCTCTCAAGCTCATTAGTACTCTCCTCTTCCTCTTCTTGGTCTCCTCCTCCAATGGTTTGAAGATCACGACCCGACTAATCCACC GCGACTCCATCTTCTCTCCACACTACAACGCCTCCTTAACCACCGCCGATCTTGCCAAGAGGATGGTGGGAGCCTCGCTAGCCCGCCACTTAACTTCTGT CCTTCTTCCGGCGTATGATAACAAGGAAAAAGAGCTAGGCGTCACTCCTCCGTTGCTATGGGTGGAGAACAAGGTCCACGTTGTGTTCTACGTCAACTTC TCGATAGGCAATCCTCCGATCCCACAGCTAGCAGTGTTGGACTCAGCCAGCAGCCTTTTGTGGGTTCGATGCCCACCTTGTACTCATTGCTCCTCCATTA CAGGAGCTACCTACTTTCATCCATCCAATTCTAAAACTTACTCTCCGCTCCCGTGTACCAACGATTACTGCACCAAGTGTACTCCTGGGCGGTGGCTGTG GTCTCCCGGTAAGGATTGCATGTTCACAATTGAATACCTGTACTCGAAAAATATAGGAGTTTACGCCTATGATCAAATGACATTTCGGACAAACAACGAC GACATGAACACGACCACCGTGCCACACGTGTTGTTTGGGTGCAGTCAGACAGAGATTGGAAGCGATTACGTCGACATATATGCCAACGGAATTATGGGGT TGGGTAAAGGATTTGGAAGTGCGCCCGAATATCGTGCCCCTTTCGTCAATCGATTGGGTGGAAAATTCTCCTACTGCGTCGGCAGCACCTCCAACCGCTC TTATCCTCATAACCGCTTGTCTTTTGGAGACGCAGCTCAATTCCTAGGCAAATCCACTCCCTTAATTCACACCATCGAGGGCTATTACTTCCTGACACTC ATCAACATCGGCATCGGAGGCGACACGATGCTGAACATAGGCACGGACGCATTCAACCACGGAACCCTGATAGACAGTGGGACCGAACTTACCCTACTCC GCCCTGAAGCTATCGACGCGGTGAAGGCAGAGGTTAAATTGGAGGCTGAGTTGTTGAATGTCCACGAAGTTCGTTCTCCGGTGAAGGGGTTGGAGCTCTG TTTCAGAGGAACCATTGACGAAGAAGGAAATGCGTTTAATTATTTTGTCTTTCACTTCGATGGCGGAGCAGAGTTGATGGTGGATAATTTCAACATATTC TGGCAAGTTGCCGATGACATTTTCTGCCTGGCTATTATGAGGTCGAACAATCATAATGTTGTTGGGATGATTGCTCAGCAGGGTTATAATGTTGGGTACG AGATGGATAGATCCACTAATTTGTTGTACTTTCAGAAGGTAGATTGTGAATTTCTCTAA
AA sequence Show only first row Show all	>Lus10002276 pacid=23171930 polypeptide=Lus10002276 locus=Lus10002276.g ID=Lus10002276.BGIv1.0 annot-version=v1.0 MAKNTPLKLISTLLFLFLVSSSNGLKITTRLIHRDSIFSPHYNASLTTADLAKRMVGASLARHLTSVLLPAYDNKEKELGVTPPLLWVENKVHVVFYVNF SIGNPPIPQLAVLDSASSLLWVRCPPCTHCSSITGATYFHPSNSKTYSPLPCTNDYCTKCTPGRWLWSPGKDCMFTIEYLYSKNIGVYAYDQMTFRTNND DMNTTTVPHVLFGCSQTEIGSDYVDIYANGIMGLGKGFGSAPEYRAPFVNRLGGKFSYCVGSTSNRSYPHNRLSFGDAAQFLGKSTPLIHTIEGYYFLTL INIGIGGDTMLNIGTDAFNHGTLIDSGTELTLLRPEAIDAVKAEVKLEAELLNVHEVRSPVKGLELCFRGTIDEEGNAFNYFVFHFDGGAELMVDNFNIF WQVADDIFCLAIMRSNNHNVVGMIAQQGYNVGYEMDRSTNLLYFQKVDCEFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002276 [exp]	0	1
					Lus10001546 [exp]	11.5	0.6589
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10041262 [exp]	16.5	0.7402
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015819 [exp]	16.6	0.6915
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036597 [exp]	26.1	0.5934
AT4G01575			serine protease inhibitor, Kaz...		Lus10010094 [exp]	40.9	0.6336
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	44.7	0.6560
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003386 [exp]	50.8	0.5901
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	127.5	0.5524
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017346 [exp]	131.5	0.5918

Compare expression of checked genes

Lus10002276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.