Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06840 658 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 647 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 434 / 4e-139 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 355 / 1e-107 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 344 / 3e-103 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 332 / 4e-99 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 325 / 1e-96 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 315 / 1e-93 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 215 / 2e-59 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70460 206 / 5e-56 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004061 [exp] 1500 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 671 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 659 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 654 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 625 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 344 / 8e-103 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 262 / 8e-78 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 249 / 6e-74 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 252 / 2e-70 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G140101 [exp] 777 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G111100 [exp] 678 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 668 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 666 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 660 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 639 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 614 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 345 / 1e-103 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 335 / 4e-100 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 328 / 1e-97 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002278 pacid=23171938 polypeptide=Lus10002278 locus=Lus10002278.g ID=Lus10002278.BGIv1.0 annot-version=v1.0 ATGATGATGACTGGTAACCAAGTTGTCATGTTAATTCAGGAGATGGGAGTAGGAATTAGCTTGTTGGGATACCGCATTGACCAGGGCAAGTGGCAGCACT GTTTGATCATTTTCAAACAAGACAGGTGCTTCATCCTTTGGAAGGTTCAGTTTCTACATATGGTTTCATATTCCTTTACACACATGCCCTCTTATGAAGT TCCCTTCATGCTTTTGCGTTTAATTGCAATGACAAAAAATCATGTGATTTTGGGTTCTGCAGTGACTGCACTTAATGCTGTCCGGACTAGCCTCAATGAT CCGAAGAGTTATCTTCGAAATTGGCAGGGAATTGATCCTTGTGCCTTGAACTGGACTGGTGTCATTTGCTCTCCAAGTGCAGATGATGGTTACCTCCACG TCCACGAATTAAATTTCATGTGGAACAGCATAAGTGGCAGCATCCCAAAGGAGATTGGCAATTTGAATTACCTGAAGATTCTGATGGTGAGTGGAAACCA GATCTCAGGTCCATTACCGGATGAGCTAGGATTTCTCCCCAATTTAACCAAATTCCAATTGGACCTGAATCAAATATCAGGACCCATACCGAAAACATTT GGAAATCTGAAAAAAGTCCAGCACTTGCAACTCAACAATAACAACTTCAGTGGAACACAGATTCCAGATTCATATGCCAATATGTCCAAGCTTCTGAAAT TTGACTTTTCCTATAATCAGCTCAATGGATCCATACCCTTAAGTTTTTCAGGCCTTCCCCTGCTTCAGAGACTGTCGTTAGAGAACAATAGCTTGAATGG TAGTGTTCCCTCCAACATCTGGCAGAATGAGAATTTCAGTGCAGAGGCAAAACTTACCTTGGACTTCCGGAACAATTCCCTTTCAGACATTTCATCCCTT CTTGCCCCACCTTTGAACGTTAGCATCAGGCTCCAAGGGAATCCTATATGTACAAGGACAGACGTTTCGATGAACATGGATCAGTTCTGCGGGGCGGCAA CAACAGCAATGGTTGATGTCGAGCCTCCTAAAATATCAAACGGAACAGTAGAAGGATGCATGCCCCAGTCGTGTCCAAGCAGTGGTGGGTATGAGTATTT CCCAGAAGCACTCCTACCCTGTCAATGTGTTGCTCCTTTAGGGGTAGGGATGCGGTTGAGGAGTCCTAGCATAACAGATTTCCGTCCCTACCGAGGATAC TTCAACCAGTACATGACTGGCAATCTCAGCGTGGCACCGTACCAGCTAGTTGTGGACTCCTTCGTATGGGAAGAAGGTCCCAGGCTCCGGATGTTGCTCA AAATTTTCCCTCCACACAATGATACTGATTTCAATACGACCGAGACTGTGCGGCTTCAGAACATGTTTTTCAACTTTGAGATCGTTGGAGATGACACGTT TGGACCCTATGATCTGCTCAGCTTCACATTACGTGGAAATGCTGTTATATTCAATCCTCCACCAAAGGGAGGAGCTGGGAGCAAGGGTTCTAAGGTAGGG ATCATATTAGGGGCAATCTCTTGTGCAATTGCTATAGCAGTTGGTATTGTAGTTGTTTGCCACTGTAAGCGCTCAAGACGACAACAGAAGCAAGTTCAAG CTGGACAAAAACCAACACCAAGGATAGGACTGAAAATCGAAGGAGTGAAGGAGTTTTGTTTTGAGGAGCTGGAGAAGGCAACGAGTGGGTTCACCAGTGA TACTCAAATTGGACAAGGTGGGTACGGGAAGGTTTACAAAGGTGTTTTGGGGGAGGGAACTTTGGTGGCGATTAAGCGTGCAAGGCAAGGTTCGCTGACT AGCGAAAAAGAGTTCTACACGGAGATAGAGCTCCTCTCGAGAGTTCACCACCGCAACTTGGTGTCCTTGCTTGGCTATTGTGATGAATCAGCGGAGCAAA TGCTGGTGTATGAATACATGCCAAATGGTTCCGTTCAAGACCTTCTTTCCGGGAGGTACGAGAAAGCTGTTAGCTTGCGGACAAGAGTGAACATCGCGCT AGGTGCGGCCAAGGGGATTCTTTATCTCCATGCAGAAGCAGACCCGCCAATTATCCACAGAGACATCAAGGCCAACAACATCCTCCTGGATTCGAAACTC ACGCCTAAAGTCTCTGACTTTGGCATCTCTAGACTTGTCCCTAAAACAACAACAGCATCATCACTGGACGACCCAAGTGATGCTGCCAGATATGAATTGT ACGGGGAAGGAAGTTCATCAGCTCCCATTTCCACAGCCGTCAAAGGAACCCCTGGATACGTAGACCCAGAGTACTTCAGAAGCCACAAACTAACAGAGAA AAGCGACGTGTACAGCCTAGGGATAGTGTTGCTAGAGCTGGTGACAGGGATGCAGCCAATCTCCCACGGCAAGAACATAGTGAGGGAAGTGTCTTTAGCT TGGGAGACTGGGATGGTGGAGGCAGTGGTGGACACAACTCTACAGAGACCACCATCATCATACTCCAAAGGTCACGCCCACAAATTCATGGGATTGGGCC TCGGGTGCTGCCACGAAGAGGCTAAGTTCCGCCCTACCATGGCCGAGGTGGTTAGGGAGCTGGAGGATCTCTGCTCATCGATCGGATCATCAGCTGGGCA GAGAGCTCACTCTGGGGAGCTGGTCGGTGCTCCGGAAGGAGGAAAATGGAGGAGCTATGGGGTGATGGAGCTGGAGCGATCGGGCAATAACAGTACCGGT GATAGTGTCAAAGCGAGTAGCAGCGGTGACACGTTAACGTTCATGTCGTCTGCCGGGTTCAGGGGGAGCGACCTTGTTAGTGGCGTCATCCCCACAATTC GACCTCGTTGA
AA sequence Show only first row Show all	>Lus10002278 pacid=23171938 polypeptide=Lus10002278 locus=Lus10002278.g ID=Lus10002278.BGIv1.0 annot-version=v1.0 MMMTGNQVVMLIQEMGVGISLLGYRIDQGKWQHCLIIFKQDRCFILWKVQFLHMVSYSFTHMPSYEVPFMLLRLIAMTKNHVILGSAVTALNAVRTSLND PKSYLRNWQGIDPCALNWTGVICSPSADDGYLHVHELNFMWNSISGSIPKEIGNLNYLKILMVSGNQISGPLPDELGFLPNLTKFQLDLNQISGPIPKTF GNLKKVQHLQLNNNNFSGTQIPDSYANMSKLLKFDFSYNQLNGSIPLSFSGLPLLQRLSLENNSLNGSVPSNIWQNENFSAEAKLTLDFRNNSLSDISSL LAPPLNVSIRLQGNPICTRTDVSMNMDQFCGAATTAMVDVEPPKISNGTVEGCMPQSCPSSGGYEYFPEALLPCQCVAPLGVGMRLRSPSITDFRPYRGY FNQYMTGNLSVAPYQLVVDSFVWEEGPRLRMLLKIFPPHNDTDFNTTETVRLQNMFFNFEIVGDDTFGPYDLLSFTLRGNAVIFNPPPKGGAGSKGSKVG IILGAISCAIAIAVGIVVVCHCKRSRRQQKQVQAGQKPTPRIGLKIEGVKEFCFEELEKATSGFTSDTQIGQGGYGKVYKGVLGEGTLVAIKRARQGSLT SEKEFYTEIELLSRVHHRNLVSLLGYCDESAEQMLVYEYMPNGSVQDLLSGRYEKAVSLRTRVNIALGAAKGILYLHAEADPPIIHRDIKANNILLDSKL TPKVSDFGISRLVPKTTTASSLDDPSDAARYELYGEGSSSAPISTAVKGTPGYVDPEYFRSHKLTEKSDVYSLGIVLLELVTGMQPISHGKNIVREVSLA WETGMVEAVVDTTLQRPPSSYSKGHAHKFMGLGLGCCHEEAKFRPTMAEVVRELEDLCSSIGSSAGQRAHSGELVGAPEGGKWRSYGVMELERSGNNSTG DSVKASSSGDTLTFMSSAGFRGSDLVSGVIPTIRPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	3.2	0.9262
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	4.9	0.9091
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006557 [exp]	5.7	0.9157
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10041581 [exp]	6.2	0.8919
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	9.9	0.9093
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	10.6	0.9131
					Lus10019212 [exp]	10.7	0.8651
AT4G27290			S-locus lectin protein kinase ...		Lus10037729 [exp]	12.7	0.9121
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	15.5	0.9095
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	15.8	0.8877

Compare expression of checked genes

Lus10002278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.