Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59310 97 / 2e-23 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59340 92 / 2e-21 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59320 79 / 2e-17 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 65 / 4e-12 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004060 [exp] 183 / 3e-56 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10003247 [exp] 104 / 5e-26 AT3G59310 256 / 1e-83 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10026744 [exp] 98 / 2e-23 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10025530 [exp] 95 / 3e-22 AT3G59310 432 / 7e-152 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030800 [exp] 134 / 4e-37 AT3G59310 265 / 7e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.002G230600 [exp] 100 / 1e-24 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.014G151800 [exp] 100 / 4e-24 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF06027 [flax] [poplar] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Lus10002279 pacid=23171947 polypeptide=Lus10002279 locus=Lus10002279.g ID=Lus10002279.BGIv1.0 annot-version=v1.0 ATGGAGCTGCAAATGAGCAACTTATGGTGGAGAGTGTGGCTGACTTTCTTGGGTCAGGTCATTTCTTTCTCCCTTGCACTCGCCAGCTTCACTTCTTCCC TCGTTGCCTCTCTTGGAGTTGATGCACCAATATCTCAGAGTACCTTCTGTTACCTCCTCTTGGCATTGGTCTACGGCACCGTATTGCTCCGCCGCCGCCG CAAATTGCAGGTCACCTGGTACTGGTACCTCCTCCTCGGATTCATCGATGTGCAGGGCAATTTTCTCGGAGCTGTAGGTGGATCAAACCCTCTTCTGAGC GACACACTTGTCATACTCGGAACCATTTTCTTCGCTTTGAGCAACGTTGGTGAGGAATTTTGTGTGAAGAAGAGAGACAGGATTGAAGTTGTGGCGATGC TTGGTGTATTTGGTCTGCTAGTCAGCTTGCTTCAGCTATCCGTCTTTGAGATCAATACCCTCAAGTCAGTCAACTGGTCTGCGATATATCAAGCTTTCGC CACTACTGTGTGCATGCCAATAGCTTTTTCCCGGAAAGATTTTCCATGTGAAATCATTTGTGTCGTATTAGCAGTTGCTGGCTTTACAGTAGCAATCTTT TCATTCTTCTCCCTCACTCCCATTGTGCTCAAGTTGAGTGGAGCAGCACTGTTCAACCTTTCCATCCTGACTTCTGATATTTACTCCATGACGGACACGG AGGAGGATATACGCTCAAAGACTGAACTGAACGGTGAGAATCCCAGCGTTCCAGTGAGCCAGCAACAGCAACCACTACTGTCAGCATGA
AA sequence Show only first row Show all	>Lus10002279 pacid=23171947 polypeptide=Lus10002279 locus=Lus10002279.g ID=Lus10002279.BGIv1.0 annot-version=v1.0 MELQMSNLWWRVWLTFLGQVISFSLALASFTSSLVASLGVDAPISQSTFCYLLLALVYGTVLLRRRRKLQVTWYWYLLLGFIDVQGNFLGAVGGSNPLLS DTLVILGTIFFALSNVGEEFCVKKRDRIEVVAMLGVFGLLVSLLQLSVFEINTLKSVNWSAIYQAFATTVCMPIAFSRKDFPCEIICVVLAVAGFTVAIF SFFSLTPIVLKLSGAALFNLSILTSDIYSMTDTEEDIRSKTELNGENPSVPVSQQQQPLLSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59330			Eukaryotic protein of unknown ...		Lus10002279 [exp]	0	1
AT5G17630			Nucleotide/sugar transporter f...		Lus10004312 [exp]	9.6	0.7724
					Lus10018751 [exp]	9.7	0.7744
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	22.4	0.8094
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	29.5	0.8077
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10021277 [exp]	30.6	0.7981
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	44.4	0.7894
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	48.5	0.7679
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	52.4	0.7738
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	56.5	0.7011
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	57.8	0.7296

Compare expression of checked genes

Lus10002279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.