Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71090 186 / 5e-55 Auxin efflux carrier family protein (.1) AT5G01990 141 / 1e-38 Auxin efflux carrier family protein (.1) AT5G65980 92 / 1e-20 Auxin efflux carrier family protein (.1) AT2G17500 87 / 5e-19 Auxin efflux carrier family protein (.1.2.3.4) AT1G76530 77 / 2e-15 Auxin efflux carrier family protein (.1) AT1G76520 76 / 3e-15 Auxin efflux carrier family protein (.1.2) AT1G20925 69 / 7e-13 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004059 [exp] 319 / 6e-107 AT1G71090 234 / 3e-72 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 152 / 2e-42 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 152 / 4e-41 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10016705 [exp] 102 / 7e-26 AT1G71090 134 / 2e-37 Auxin efflux carrier family protein (.1) Lus10036000 [exp] 105 / 1e-25 AT1G71090 486 / 3e-172 Auxin efflux carrier family protein (.1) Lus10036001 [exp] 99 / 2e-25 AT1G71090 131 / 3e-37 Auxin efflux carrier family protein (.1) Lus10016704 [exp] 100 / 6e-24 AT1G71090 481 / 2e-170 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 83 / 2e-17 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 82 / 3e-17 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G122400 [exp] 219 / 5e-68 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 213 / 2e-65 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 207 / 2e-63 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.008G127700 [exp] 203 / 1e-61 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 132 / 4e-35 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 128 / 1e-33 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.005G099300 [exp] 89 / 2e-19 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.011G145600 [exp] 76 / 4e-15 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.001G456300 [exp] 76 / 6e-15 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 72 / 5e-14 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10002280 pacid=23171927 polypeptide=Lus10002280 locus=Lus10002280.g ID=Lus10002280.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCGATGAGTGACGACAAACAAGTAAAATCCCCCGGAGAAGAAATCATGGCGTCAATTCTTCCCCTCCTCAAACTCATAACTCTAACCCTCT TCGGCCTAATCCTCTCCCATCCCAAAATCCAGTTCATCCCCAGACAGACATTCAAGCTGCTCAGCAATCTCGTCTTCGTCCTCTTCTTGCCCTGCTTAAT CTTCACTAACTTAGGCCAATCCGTCACGATTCACAACGTCGTAAATTGGTGGTTCATCCCCGTCAACGTCGTCGTCAGCACCGCTGCTGGGTGCATTCTG GGATGCTTAGTCGCCGTCGTCTGTCGCCCTCCCCCGCAGTTCTTCCGGTTCACGGTCATCGCCACCGGGTTCGGAAACACCGGGAATATCGCGTATGCTG TTGTCGGGACGATTTGCCGTCGGAGCTCCGGCAACCCGTTTGGACCCGACTGCTACTCAAACGGCGTCGCTTATGCGTCGATTGCGCAGTCGGTGTCGGT TGTTCTGGTTTACACTCTCGTTTACCACATGATGGAGCCACCTCTTGAGTATTACGAAGTAATCAACCACGAAGAACAAGAAGAAGAAGACGGGGAATTA GGTGAAATTGGGGAAATCGGCAGCGGCGGAAGGGAGGTAATTGTGGTGGGCGCCGCCGGCTCCACGACGGAAGCTGGAGGTCCGGGAGGCGGCAGAGAGA GTCCGAAATCAATGAAATGTCTGGCGGAGCCGAGAGTGGTGAGGAAGATGAGAGTGGTGGCGGAGCAGACGCCGATCCACCACATACTGCAGCCTCCGAC GATCGCGTCTCTGCTGGCGTTAGTGATCGGAGTGATTCAGCCGCTTAAAGGAGTGGTGTACGGCGCGGACGCGCCGCTGGCGTTAATAACGGACAGCCTG ACGATGATGGCGGAGGCGGCGGTTCCGGGCGGGATAGAGGGATGTTGGCGGAAGGGCCGAACGAGTCGAGCCTCGGGGTGA
AA sequence Show only first row Show all	>Lus10002280 pacid=23171927 polypeptide=Lus10002280 locus=Lus10002280.g ID=Lus10002280.BGIv1.0 annot-version=v1.0 MASPMSDDKQVKSPGEEIMASILPLLKLITLTLFGLILSHPKIQFIPRQTFKLLSNLVFVLFLPCLIFTNLGQSVTIHNVVNWWFIPVNVVVSTAAGCIL GCLVAVVCRPPPQFFRFTVIATGFGNTGNIAYAVVGTICRRSSGNPFGPDCYSNGVAYASIAQSVSVVLVYTLVYHMMEPPLEYYEVINHEEQEEEDGEL GEIGEIGSGGREVIVVGAAGSTTEAGGPGGGRESPKSMKCLAEPRVVRKMRVVAEQTPIHHILQPPTIASLLALVIGVIQPLKGVVYGADAPLALITDSL TMMAEAAVPGGIEGCWRKGRTSRASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71090			Auxin efflux carrier family pr...		Lus10002280 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10021666 [exp]	11.0	0.6816
AT2G19130			S-locus lectin protein kinase ...		Lus10031596 [exp]	21.0	0.5835
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Lus10024163 [exp]	41.2	0.6553
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002910 [exp]	61.9	0.6228
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	94.3	0.5859
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	111.0	0.5778
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	117.5	0.5502
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10011905 [exp]	120.0	0.5319
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	151.0	0.5634
AT1G71090			Auxin efflux carrier family pr...		Lus10002281 [exp]	156.5	0.5631

Compare expression of checked genes

Lus10002280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.