Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 215 / 2e-69 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G02960 158 / 4e-47 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT1G02610 153 / 1e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 154 / 2e-45 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G47550 147 / 7e-43 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 142 / 2e-40 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 133 / 4e-38 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 56 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G18760 54 / 3e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004058 [exp] 484 / 1e-175 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034640 [exp] 207 / 5e-66 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035271 [exp] 202 / 4e-64 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10013491 [exp] 186 / 2e-55 AT5G13240 299 / 1e-99 transcription regulators (.1) Lus10021670 [exp] 176 / 2e-53 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 171 / 1e-51 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10012826 [exp] 162 / 2e-48 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034454 [exp] 162 / 4e-48 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 159 / 5e-47 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093500 [exp] 329 / 3e-114 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 296 / 9e-102 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 273 / 3e-92 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 261 / 2e-87 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 167 / 1e-50 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.014G121900 [exp] 159 / 6e-48 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G086300 [exp] 160 / 9e-48 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 142 / 3e-41 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.002G196600 [exp] 141 / 3e-41 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G126600 [exp] 140 / 2e-40 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10002282 pacid=23171944 polypeptide=Lus10002282 locus=Lus10002282.g ID=Lus10002282.BGIv1.0 annot-version=v1.0 ATGTTAACCGACGGCGACGACACTCAATCTGTTGCAGAGGGAGGAGGGAAAAGGAAAGGAGTCTTCTTTACATACACTTCCCAGATGAAGAAAGCTGCAA TAGAAAGCAAAAGCCAGCTGCATCAGCCTGCTACAACATCTTCAAGCAAGGAACTAGCTTATATGTCATCTCCAAAGAAACTCGTTGACTGTAGAATTTG CCATGATGAGGATGAGGACACAAACATGGAAGTTCCATGCTCTTGTAACGGCAGTTTAAAGTATGCTCATAGAAAATGTATTCAGAGATGGTGCAATGAG AAGGGTGACACAATCTGTGAAATTTGCCACCAGCAATATAAGCATGGTTATACAGCACCTACTCCTTTGTTCCATTACGGAGGTCTTCCCGTGAACATCA GGGGAAACTGGGATATCTCCAGGAATGATTACCTTCACAATCCTCAGTTCATAGCAATGGTGTCAGATGACCATGAAATATTGGGTTCCGCCTTTGATGA TTACGCTACTCCATCTCCGAGAAGCCTAATGTGTTGCCGAATCGTGGCCATAATTTTCATGGTCCTTCTGGTTCTGCGCCATACACTTCCAGTCATCACC GCTGGCGCTGAAGACTACTCTTTGACAATGTTCACATTATTGATGTTGAGAACAATCGGGATTCTTCTACCGATTTATGTCATGGTTAAAGCATTCACAG CCATCCAGCGTCGCCGTAACCATTACCAACAGAGCTCGCGTATGGGAATGATGACATCCGATGAAGAGAACGAGCTGCCTCGATTGCAACCTCAGTCCCG GCTTATTCATGTGCGGTAA
AA sequence Show only first row Show all	>Lus10002282 pacid=23171944 polypeptide=Lus10002282 locus=Lus10002282.g ID=Lus10002282.BGIv1.0 annot-version=v1.0 MLTDGDDTQSVAEGGGKRKGVFFTYTSQMKKAAIESKSQLHQPATTSSSKELAYMSSPKKLVDCRICHDEDEDTNMEVPCSCNGSLKYAHRKCIQRWCNE KGDTICEICHQQYKHGYTAPTPLFHYGGLPVNIRGNWDISRNDYLHNPQFIAMVSDDHEILGSAFDDYATPSPRSLMCCRIVAIIFMVLLVLRHTLPVIT AGAEDYSLTMFTLLMLRTIGILLPIYVMVKAFTAIQRRRNHYQQSSRMGMMTSDEENELPRLQPQSRLIHVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38070			RING/FYVE/PHD zinc finger supe...		Lus10002282 [exp]	0	1
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	8.7	0.8819
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	9.8	0.8575
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10042353 [exp]	12.2	0.8580
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	12.6	0.8683
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	14.4	0.8588
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10022810 [exp]	16.7	0.8527
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029297 [exp]	21.5	0.8398
AT5G04250			Cysteine proteinases superfami...		Lus10037388 [exp]	21.6	0.8313
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10039907 [exp]	25.0	0.8578
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10016929 [exp]	26.3	0.8100

Compare expression of checked genes

Lus10002282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.