Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77840 414 / 2e-142 Translation initiation factor IF2/IF5 (.1) AT1G36730 312 / 2e-102 Translation initiation factor IF2/IF5 (.1) AT5G20920 61 / 5e-10 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT5G36230 49 / 4e-06 ARM repeat superfamily protein (.1) AT1G65220 47 / 2e-05 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004057 [exp] 704 / 0 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 497 / 2e-175 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10010981 [exp] 294 / 2e-99 AT1G36730 282 / 3e-95 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 233 / 8e-74 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1) Lus10007559 [exp] 57 / 8e-09 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10029667 [exp] 47 / 9e-06 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10042703 [exp] 47 / 3e-05 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1) Lus10018182 [exp] 47 / 4e-05 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1) Lus10012186 [exp] 46 / 4e-05 AT5G20920 373 / 3e-131 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093600 [exp] 559 / 0 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 522 / 0 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1) Potri.017G122200 [exp] 501 / 3e-176 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.013G158400 [exp] 60 / 8e-10 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 59 / 1e-09 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G053600 [exp] 47 / 2e-05 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1) Potri.013G085600 [exp] 47 / 2e-05 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01873 [flax] [poplar] eIF-5_eIF-2B Domain found in IF2B/IF5 CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10002283 pacid=23171926 polypeptide=Lus10002283 locus=Lus10002283.g ID=Lus10002283.BGIv1.0 annot-version=v1.0 ATGGCTCTGCAGAACATTGGTGCTTCAAACAGTGATGATGCCTTCTACAGGTACAAGATGCCTAGAATGGTTACGAAGATTGAGGGCAAAGGTAATGGTA TCAAGACTAATGTTGTGAACATGGTTGACATTGCCAAGGCTTTGGCTAGGCCAGCTTCTTATACCACCAAGTATTTTGGCTGTGAACTTGGAGCTCAATC TAAATTTGATGAGAAAACTGGCATCTCTCTGGTCAATGGTTCACACGATACTGCAAAGCTTGCTGGGCTGCTGGAGAACTTCATCAAAAAGTATGTTCAG TGCTACGGCTGTGGGAATCCAGAGACTGAGATACTTATCACTAAAAGACAGATGCTCCAACTGAAGTGCGCTGCCTGTGGATTTGTTTCAGACGTCGATA TGAGAGATAAGCTGACCACTTTTATCTTGAAGAACCCACCTGAATCAAAGAAGGGATCTAAAGACAAGAAAGCAATGAGGAGAGCTGAGAAGGAACGGCT GAAAGAAGGTGCTGCAGCTGATGAAGAGCTGAAAAAACTGAAGAAGGATGTCAAGAAGAAAGCCACATCTTCCAAAGACGGTGCAGTGAAAGCTGGAAGT ACAAAGAAGAAAGCAAGTGGATCCGATGAAGAACATTTATCTCCAACCCACAGTCAGGTTGATGAGAATGAAGAGCTTGATGATGAAGATGACGATGATG ATAATGTTCAGTGGCACACTGATACCTCTGCCGAGGCAGCCCGTCTTCGTATCCAAGAGCAATTGAGTGCTGCTACTGCTGAAATGGTCATGCTTTCTAC AATTGAAACTGAGAAGAAAGCGAAGTCAACTGCCAAAGCAAATGGCAGCCCCAATGCTGCTTCTCCTCGACGTGAAGAGACACCTAAAGAGGAGAATGGG AAGCCGATCTCTTCGAAGACCCTTGCTGATGAAATAAAAGCAGGAATTGATGGGGGAGTAACTGCAGCACGGTTGCCTGGTCTTCTGGAGTCATTAACCG GGTCTGGTCAAGAAAAGATGGATGCTTTGTTCATGGCGCTGTTTCAGGGTATTGAGAAGGGACTGTCCAAAGAGGTTATTAAGAAGAAGAAATATCTGAT TGCGGCCATTGCCAGTGGTGGAGATTCACCGCTGCTTCTCATTGGAGCAATTCAGGGTTTCTTTGAGAAGTCTAGTACAGTAAAGGAGCTCCCTCTTGTT CTTAAAGCCCTGTATGATGCTGATGTATTGGAGGAAGAGTACATTATGCAGTGGTATCAGAAGTTGAGAGCCAGCAACAAGGAGTCTAAGATTGTGAAGA GCGCTGGGCCGTTCATCGATTGGCTCCAGAATGCCGAATCTGAGTCTGAAGAAGAATGA
AA sequence Show only first row Show all	>Lus10002283 pacid=23171926 polypeptide=Lus10002283 locus=Lus10002283.g ID=Lus10002283.BGIv1.0 annot-version=v1.0 MALQNIGASNSDDAFYRYKMPRMVTKIEGKGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGSHDTAKLAGLLENFIKKYVQ CYGCGNPETEILITKRQMLQLKCAACGFVSDVDMRDKLTTFILKNPPESKKGSKDKKAMRRAEKERLKEGAAADEELKKLKKDVKKKATSSKDGAVKAGS TKKKASGSDEEHLSPTHSQVDENEELDDEDDDDDNVQWHTDTSAEAARLRIQEQLSAATAEMVMLSTIETEKKAKSTAKANGSPNAASPRREETPKEENG KPISSKTLADEIKAGIDGGVTAARLPGLLESLTGSGQEKMDALFMALFQGIEKGLSKEVIKKKKYLIAAIASGGDSPLLLIGAIQGFFEKSSTVKELPLV LKALYDADVLEEEYIMQWYQKLRASNKESKIVKSAGPFIDWLQNAESESEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36730			Translation initiation factor ...		Lus10002283 [exp]	0	1
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	13.2	0.6173
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	31.9	0.6044
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	40.5	0.6350
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	40.5	0.6439
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	45.1	0.6644
AT4G31340			myosin heavy chain-related (.1...		Lus10026967 [exp]	45.9	0.6134
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	61.2	0.6488
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	64.3	0.6163
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10015115 [exp]	65.9	0.6357
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10014756 [exp]	68.1	0.6367

Compare expression of checked genes

Lus10002283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.