Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16630 656 / 0 ATRAD4 DNA repair protein Rad4 family (.1.2) AT5G49570 48 / 4e-05 ATPNG1 peptide-N-glycanase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004055 [exp] 1452 / 0 AT5G16630 771 / 0.0 DNA repair protein Rad4 family (.1.2) Lus10000108 [exp] 292 / 1e-93 AT5G16630 66 / 5e-13 DNA repair protein Rad4 family (.1.2) Lus10009734 [exp] 61 / 4e-10 AT5G16630 49 / 1e-06 DNA repair protein Rad4 family (.1.2) Lus10009179 [exp] 50 / 1e-05 AT5G49570 817 / 0.0 peptide-N-glycanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087400 [exp] 672 / 0 AT5G16630 786 / 0.0 DNA repair protein Rad4 family (.1.2) Potri.013G039600 [exp] 49 / 1e-05 AT5G49570 834 / 0.0 peptide-N-glycanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF03835 [flax] [poplar] Rad4 Rad4 transglutaminase-like domain CL0125 [flax] [poplar] PF10404 [flax] [poplar] BHD_2 Rad4 beta-hairpin domain 2 CL0125 [flax] [poplar] PF10403 [flax] [poplar] BHD_1 Rad4 beta-hairpin domain 1 CL0123 [flax] [poplar] HTH PF10405 [flax] [poplar] BHD_3 Rad4 beta-hairpin domain 3
Representative CDS sequence Show only first row Show all	>Lus10002285 pacid=23171941 polypeptide=Lus10002285 locus=Lus10002285.g ID=Lus10002285.BGIv1.0 annot-version=v1.0 ATGCGAACCAGGAGAACAGAGAATGACCATACTCCTCCTCCTCCTCCTTCTACGTCAGCAAAAGGCAGTGTTAGCCGTATTGCAGAAGGTCCGAATATTG CCGACATGTCAAGGAATGCGGTTGATAAAGTTGTAAGACGGGTGACAGCTCGTAGCTCATTGCGGGAAAGGAAAGAGCAAGATAACAGGTCAAAAAGTAA AGAGAAACAAGTTGTCGATGCAAAGGCTACATGGAACAAGGTGGATGCGCAGCGTTTTGAAAAGTTACGAAAGGAAAGGAATCAGAGGGAGGTGGGTGCC TCTAGTTGCCCTATTCAAGAGAGTGAGAATCAGATGGATGACATTGACTGGGAAGATGGTTCTATGTCGGTGATGGATCCTGTAAAAATTCCTTGTAATC TAGGTGATGATAACCGGACGCTGACTATTGAGTTCGACACAGTACCTGATTCTTCCAAGCGGAAGCCCTCTCGTCGAGCTACTGCTGAAGAGAAGGAATT AGCTGAACTTGTGCATCGAGCTCATTTACTTTGTCTGCTTGCAAGGGGCAGAGTAGTGGATAGTGCCTGTGATGATCTTCTCATTCAGTTGGGTGAGTCT ATCTTTTGCTCTTCCACATCAATTGTTCGGAGATCTTGTTCTGATAACTGGTGTGAAACTTGCAGTTTCATAACAATTTCCGAGTCAGGAGTGCAGAAGG GATCATTTTCTTCAGCTTTGGCTAATGCTCTTGGAAGACGTGAAGGGAGTGCAGAGGAGATTGCAGCACTGTCTGTGGCACTGTTCAGAGCCTTAAAATT TACAACTAGGTATTGTTGTCTCATGGTGGAGCTTGAAATTCTGGTTGTTGGAGCATGTGCTCGCTACAGACTGCAGGAGGAGTCCATGTTTCCCAATCAG CATGGATCTGCTTTGAATGATTTTTCCAAAAGTAAAGATACCAGCACAAGGAAGACGAAAATTGAGTTTCCTGCTGCTGTTGAATTTAAAGCTGGAACTA GGAACTCGTCGCCTAATATTTCTCTTGGATCTATTACTGAGAAAAAACAAGGATCAAAGAGAAAAAGTGATAATGAGTTGGAGATGCAGTTGCTAATGGC GCTCTCTGCTACAGCTGTAGATCATAGTGCGGCAGTGGATGTTATGAGGCCTAGCACGAGCTGTTCTGAAGTTCTCCCTTCGCTTAAAAGAACTAGAAGA GTTGCAGCTGATGGATCTACGCCCATCTCTACTGCAATTGGATCGAAAAAAATGGGATCCCCGCTGTATTGGGCAGAAATATACTGCACAGGTGAAAACT TGACAGGAAAGTGGGTGCATGTGGATGCTATAAATGCAATTCTTGACGGAGAGCATACGGTTGAAGCTGCAGCAGCTGCATGCAAAACATCTCTAAGATA TGTTGTCGCATTTGGCGGGAGAGGGGCTAAAGACGTTACCCGCAGGTATTGTATGAAATGGCACAAAATTGCATCCCAAAGAGTAAACTCCACTTGGTGG GATGATGTATTAGCCCCATTGAGCGAGTTGGAATCAGGAGCAACAGGAGGTCAAGTGCAACTGGCAGAGAATGCTGCTAGTAGGAACTCTTTGGAGGATG TGGAGTTGGAGACTAGAGCGCTAACCGAACCTCTTCCAACAAATCAGCAAGCGTATAGAAGTCATCGTTTGTATGCACTTGAGAGATGGCTTACCAAGTT TCAGATACTTCATCCGAAAGGTCCTATTGTTGTTTTTTGTTCTGGCAAGCCAGTTTATCCTCGCACATGTGTTCAGACGCTGAAAACAAAAGAACGATGG TTGCGTGAAGCGCTGCAGGTTAAAGTCAACGAGCTTCCGGCAAAGGTTCTGAAAGATTCGAAAAAGCTTACTAAAGTACAATCGTTTGAAGATGATGAGA ATGAAGAGTGCAACTCTGAGGGAAATATTGAACTCTATGGTACATGGCAGCTTGAACCATTGCAACTACCTATTGCTGTAAATGGGATTGTGCCAAGGAA TGAACGTGGACAAGTTGATGTGTGGTCGGAGAAGTGCCTGCCAATAGGGACTGTGCACATAAGGTTACCAAGGGTGTTTAATGTTGCCAAGAGGCTAGAT ATTGACTATGCACCTGCTATGGTTGGTTTTGAATTCCGAAATGCCCGTTCATTCCCTGTTTTCGATGGTATTGTTGTATGTGCCGAATTCAAGGACGCTA TTTTGGAGGCGTACTACGAGGAGGATAGAAGGAAGGCGGAAGAGAAAAGGAGAGATGAAGTAATGGCTGTTTCTAGGTGGTATCAACTTCTATCGTCCAT GATAACTAGAGAAAGGCTAAACAAGTTGTATGGAGACAATCCATCAGTGCAAATTAACAGCAATGTTCAGAATGCCAATAGAAAAGCAGAGAAAGACGTC AATGTCAGTCAACATGGCGGCATCCTACAGTCACCATCTGGTAGTTGTAAAGGAAATAAGATGAAAACTACAGTAAACACTTCACCATATGCCCCAGCAG AGGAACACGAACACGTATTTCTGACCGAAAACTCGAGTTTCAACGAGCAAAGCTCGGTAACTACAAAACGATGCTACTGTGGCTTTTCCATTGAGGTGGA ACAACTGTAA
AA sequence Show only first row Show all	>Lus10002285 pacid=23171941 polypeptide=Lus10002285 locus=Lus10002285.g ID=Lus10002285.BGIv1.0 annot-version=v1.0 MRTRRTENDHTPPPPPSTSAKGSVSRIAEGPNIADMSRNAVDKVVRRVTARSSLRERKEQDNRSKSKEKQVVDAKATWNKVDAQRFEKLRKERNQREVGA SSCPIQESENQMDDIDWEDGSMSVMDPVKIPCNLGDDNRTLTIEFDTVPDSSKRKPSRRATAEEKELAELVHRAHLLCLLARGRVVDSACDDLLIQLGES IFCSSTSIVRRSCSDNWCETCSFITISESGVQKGSFSSALANALGRREGSAEEIAALSVALFRALKFTTRYCCLMVELEILVVGACARYRLQEESMFPNQ HGSALNDFSKSKDTSTRKTKIEFPAAVEFKAGTRNSSPNISLGSITEKKQGSKRKSDNELEMQLLMALSATAVDHSAAVDVMRPSTSCSEVLPSLKRTRR VAADGSTPISTAIGSKKMGSPLYWAEIYCTGENLTGKWVHVDAINAILDGEHTVEAAAAACKTSLRYVVAFGGRGAKDVTRRYCMKWHKIASQRVNSTWW DDVLAPLSELESGATGGQVQLAENAASRNSLEDVELETRALTEPLPTNQQAYRSHRLYALERWLTKFQILHPKGPIVVFCSGKPVYPRTCVQTLKTKERW LREALQVKVNELPAKVLKDSKKLTKVQSFEDDENEECNSEGNIELYGTWQLEPLQLPIAVNGIVPRNERGQVDVWSEKCLPIGTVHIRLPRVFNVAKRLD IDYAPAMVGFEFRNARSFPVFDGIVVCAEFKDAILEAYYEEDRRKAEEKRRDEVMAVSRWYQLLSSMITRERLNKLYGDNPSVQINSNVQNANRKAEKDV NVSQHGGILQSPSGSCKGNKMKTTVNTSPYAPAEEHEHVFLTENSSFNEQSSVTTKRCYCGFSIEVEQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	0	1
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	2.4	0.8667
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	6.0	0.8220
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	6.2	0.8029
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	6.5	0.8341
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	7.5	0.8319
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	8.2	0.8380
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	9.7	0.8160
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	10.5	0.8259
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	11.2	0.8412
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	14.8	0.8350

Compare expression of checked genes

Lus10002285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.