Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01918 91 / 2e-23 PQL3 PsbQ-like 3 (.1) AT4G21280 62 / 3e-12 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT4G05180 57 / 2e-10 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004054 [exp] 282 / 2e-99 AT2G01918 89 / 6e-23 PsbQ-like 3 (.1) Lus10018385 [exp] 56 / 4e-10 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10007627 [exp] 55 / 9e-10 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 50 / 8e-08 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 48 / 4e-07 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129700 [exp] 114 / 8e-33 AT2G01918 100 / 7e-27 PsbQ-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10002286 pacid=23171943 polypeptide=Lus10002286 locus=Lus10002286.g ID=Lus10002286.BGIv1.0 annot-version=v1.0 ATGAGAAGAATAGCAATATGTGGGACAGTGACGGGATTCCTGATGCAGAACCAATGCTTAAACGCAAGTGGGTTGAATTTGGACTTTGATAGGATGATGA AGATGTCGGGTCCTTCAGCACCAACCCTGGAAGATGCAGTGAATTTAATCAGAGGGCACGCAGCGGCGTTGCTGGAAGTGAAAGAGCTGTTACAGGAGGA ATCATGGTCGGATGCTCAGAGGCTGCTCAGGAAGAACTCATCAAACCTCAAGATAGACTTTTCCTCCATCATCCAGAGCAAACCTCCTGAACTCCGGCCG CGGCTCAGGTCCCTCTACTCCAATCTCTTCAACACTGTCACCAAGCTGGACTATGCAGCCAGGGATAAAGATGTGGATATGGTATTGGAGCTGTATGAAA AGATGGCATTGGCAGTTGAGGAGGTTTTATCTTTAATCTGA
AA sequence Show only first row Show all	>Lus10002286 pacid=23171943 polypeptide=Lus10002286 locus=Lus10002286.g ID=Lus10002286.BGIv1.0 annot-version=v1.0 MRRIAICGTVTGFLMQNQCLNASGLNLDFDRMMKMSGPSAPTLEDAVNLIRGHAAALLEVKELLQEESWSDAQRLLRKNSSNLKIDFSSIIQSKPPELRP RLRSLYSNLFNTVTKLDYAARDKDVDMVLELYEKMALAVEEVLSLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10002286 [exp]	0	1
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013724 [exp]	3.9	0.9380
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	4.9	0.9443
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	4.9	0.9437
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	8.3	0.9432
AT2G38570			unknown protein		Lus10014180 [exp]	9.8	0.9198
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10002673 [exp]	9.8	0.9431
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	11.5	0.9357
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	12.6	0.9017
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	13.9	0.9081
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	16.5	0.9320

Compare expression of checked genes

Lus10002286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.