Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16620 290 / 2e-93 PDE120, TIC40, ATTIC40 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004053 [exp] 551 / 0 AT5G16620 257 / 9e-81 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129800 [exp] 379 / 1e-128 AT5G16620 357 / 6e-120 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1) Potri.004G087100 [exp] 379 / 2e-128 AT5G16620 398 / 3e-136 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF04683 [flax] [poplar] Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Representative CDS sequence Show only first row Show all	>Lus10002287 pacid=23171935 polypeptide=Lus10002287 locus=Lus10002287.g ID=Lus10002287.BGIv1.0 annot-version=v1.0 ATGGCGTTGATCTCTACTCCATCTTCCTGCTCTCCAAAATTGGTTATCGGATATCCTCCTACTTCACTCCTAAACCCTACTACTCCCCGTAGAACCCTTC CCTACTTACATCTCCGGAGCTGCCGAATTCTCCCTCCTCGCTCCAGATTCTCCGCCTCCGCATCCTACCAAGGTGATGCCGCTCCTCCGCAAGCGCAGCC GGCTGCTCGCTCTGCTACTTCCAGACGTGGAAAATCTGGAGCTGGTAATTTCGCTAGCATTTTCTCATCCAAGGGTCAGAATACGTCTTCCGTCGGTGTT ACCCCGCAACCAGTGGCTACTCCTCCTCCTTCACAAGTGGCATCATATTTGAAGGTGAGTGTTCTTGACATTCACGGTAAATATGCAATGCAGCAAGCTA TGAAAACCATGATGAGCCAGATGAATACTCAAAATAGCCAATTTGGTGGCAATACTCCAATTTCGCCATTCCAATTTCCAATGCCTTCTGTGCCTGAAAC CTCACCTTCACGTCCAACTTCCTCACCATCGTGGCCTGCTAGTGCACCTTCATATTCTAAATCAGCAGCAACTGAGGCCGCTACCTCACCTGCTCCTTCT CAATCTAGGATTACTGTAGATGTTTCTGCAACAGAAGAAGCTTCATCCACTAATGTGAATAATGAAGTCGATTCTAAAGAGGACAAAAAGAAGTATGCTT TTGTGGATGTCTCTCCGGAAGATAAAGAAACCTTAGTTGGGACTCCTTTTGGAAGTGCTGATGATGGCAATGAGACAAGCTCTATAAAAGATGCTCCATT TGAAGTAGAAGCTTCTCAAAATGGAGCAGCTTTTAAGCAGGATACAAGTGCAGGTGCAGCTGCAGCTGAGGGTTCACAATCTACTGGGTCAGGTCCAGCC TTATCGGTAGAAGCTTTGGAGAAAATGATGGAAGATCCAACAGTACAACAAATGGTCTTCCCATATTTACCTGAGGAGATGAGAAATCCTACCACTTTCA AATGGATGCTACAAAATCCAGAGTACCGTCAACAACTACAAGACATGTTAAACAATATGGGGGGAAGCAATGGATGGGACCCAAGCATGTTAGATTCCAT GAAAAATTTTGATCTCAGCAGTCCTGAGGTTAAGCAGCAGTTCGATCAAATTGGCCTCACACCTGAAGAGGTAATTTCAAAAATCATGGCCAATCCTGAT GTTGCTATGGCATTTCAAAACCCACGAGTGCAGCAAGCGATCATGGAATGCTCGCAAAATCCAATGAGCATAACCAAATACCAGAACGACAAGGAGGTTA TGGATGTTTTCAACAAGATATCAGAGCTCTTCCCCGGCGTCTCTGGCTCACCTTATTGA
AA sequence Show only first row Show all	>Lus10002287 pacid=23171935 polypeptide=Lus10002287 locus=Lus10002287.g ID=Lus10002287.BGIv1.0 annot-version=v1.0 MALISTPSSCSPKLVIGYPPTSLLNPTTPRRTLPYLHLRSCRILPPRSRFSASASYQGDAAPPQAQPAARSATSRRGKSGAGNFASIFSSKGQNTSSVGV TPQPVATPPPSQVASYLKVSVLDIHGKYAMQQAMKTMMSQMNTQNSQFGGNTPISPFQFPMPSVPETSPSRPTSSPSWPASAPSYSKSAATEAATSPAPS QSRITVDVSATEEASSTNVNNEVDSKEDKKKYAFVDVSPEDKETLVGTPFGSADDGNETSSIKDAPFEVEASQNGAAFKQDTSAGAAAAEGSQSTGSGPA LSVEALEKMMEDPTVQQMVFPYLPEEMRNPTTFKWMLQNPEYRQQLQDMLNNMGGSNGWDPSMLDSMKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPD VAMAFQNPRVQQAIMECSQNPMSITKYQNDKEVMDVFNKISELFPGVSGSPY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	0	1
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	2.0	0.8885
AT4G33480			unknown protein		Lus10033501 [exp]	2.0	0.8724
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	6.9	0.8247
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	9.2	0.8449
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	12.8	0.8583
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	13.7	0.8535
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037768 [exp]	14.1	0.8302
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	18.2	0.8458
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10027318 [exp]	27.5	0.7022
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	27.7	0.8325

Compare expression of checked genes

Lus10002287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.