Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31430 671 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G15930 475 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 448 / 6e-150 SLO1 SLOW GROWTH 1 (.1) AT1G08070 424 / 6e-140 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 422 / 5e-139 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 404 / 3e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 402 / 9e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 393 / 2e-126 unknown protein AT3G29230 382 / 2e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 388 / 4e-125 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004052 [exp] 1181 / 0 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 440 / 7e-146 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 437 / 6e-145 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 424 / 2e-141 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 424 / 2e-140 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 403 / 2e-131 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 397 / 4e-130 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 389 / 1e-127 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 391 / 6e-127 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088600 [exp] 871 / 0 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G031600 [exp] 520 / 6e-177 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 480 / 2e-161 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 475 / 1e-160 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.013G103600 [exp] 441 / 1e-147 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 441 / 2e-146 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 428 / 3e-142 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.006G105700 [exp] 423 / 3e-140 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 421 / 4e-139 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 420 / 4e-138 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002288 pacid=23171924 polypeptide=Lus10002288 locus=Lus10002288.g ID=Lus10002288.BGIv1.0 annot-version=v1.0 ATGGCCGAATTAAAAGAGGTTCACTGCCAGATGTATCGGAACCTGCTGCATCAAGACGCCGACGCTCTCAGCAAGCTCATGGTCTTTTGTACGGACAATC GCAATGGAAACCTCAATTATGCTCAGAGAGTCTTCGATGTTATTGAGAAGCCTTGTTTGTTTATCTACAATCTCATGATCAAAGTGAATGCGAAGCAAGG CAGTTTCAGAAGATGTCTGTTGCTCTTTAGCAGGCTTAGGGGAGATGGCTTATGGCCTGATAACTTCACTTACCCGTTTGTCTTGAAAGCTATCGGATGT TTGGGGAAGTCTATGGAGGCTGAAAGAGTTCACGGGTTTGTTGCTGTTACGGGGCTGCAGTGCGATACGTATGTGATTAATTCCTTGATGGATATGTATG CTCATTTGGGTCGAATAGACGTGGCACAGAAACTGTTTGATAACATGCCTGAGAAAGATGTGATTTCTTGGAATGTGCTTATATCCGGATTCGTTAGGCT TCGGAAGTTTGAGGATGCTATCAATGCTTTCTGCTGTATGAGAAAGGAAAGTGGTTTCAGACCTGATGAAGCTACAGTTGCAAGCACTCTCTCTGCATGT GCCGCTTTGAAAAGCTTAGAACTTGGGAAACAAATTCACCGTTTTGTTACAGATGAACTCGAATGCACTTTGATTATCGGCAATGCACTACTGGACATGT ACTGCAAGTGTGGTTGTTTGGAAGTGGCTCGAGAACTATTCGACACCATGCCGGCTAAAAATGTCATATGTTGGACAAGTATGGTGTCTGGTTACATCAC TTGTGGCGAGTTGGACGAGGCCAGAAAATTGTTTGAGAGGAGTCCTGGGAGAGACATAGTTCTTTGGACTGCTATGATAAATGGGTATGTTCAGTTTAAT CGATTCGATGAAGCCGTGGAGCTCTTCAGAGATATGCAAGCTAGGAGAATTAGGCCGGACAAGTTCTTATTGGTTGCTCTTCTGACAGGCTGTGCTCAAA CCGGTGCTCTAGAGCAAGGTAAGTGGATACATGAATACATCGAAGAAAATGGAATAGTAGTTGATGCTATAGTCGGTACTGCTCTTATCGATATGTATGC AAAATGTGGATGTATCGATCGGGCATTGAAGATCTTCTATGTTTTACGTGATAAAGATACAGCCTCATGGACTGCAATCATATGTGCGCTTGCAATGAAC GGGAAAACGTACGAGGCACTATATTTGTTTTCGGAAATGAATCAAGTTGGAGTTAGACCTGATGATGTTACTTATATTGGTGTTTTAAGTGCTTGTAGCC ATGGGGGATTAGTCGAGGAAGGTCGTGAATTCTTCAATTCCATGACCAAGTTGCACCAGATTCAACCCAAGTTGGAACACTATGGGTGCTTTATAGACTT ACTTGGTCGTGCCGGATTGTTGAATGAAGCAGAGGAAACGATACAAAAGATTCTATATGTAGATCCGGTGGATGTTATACCTATTTATGGTTCTCTGGTT AGTGCCTGTAGAATCTATAGGAACACTGAGATAGGCGAGAGGGTTGCTAAAAAGCTGGTGACTATGGCATCAGATGATGCTAGCGTCCATACACTTCTAG CTAATATCTATGCCTCCACAAGCAGATGGCAAGAGGTGAAAGATGTGAGAAATAAAATGAAAGATCTTGGTGTTAAGAAGACCCCTGGTTGTAGCTTAAT TGAGGTTGATGGTGTCGTCCATGAGTTCACCGTAGGTGATCCGTCTCACCCGGCAGTGACGGAAATATATTCGACCTTGGACGGATTGGCAAGTCCGTTG TTGGTTTCAGAAGACAATACGGTGATAAAGGAAGAGTTCCCAGAAGTTAGTTAA
AA sequence Show only first row Show all	>Lus10002288 pacid=23171924 polypeptide=Lus10002288 locus=Lus10002288.g ID=Lus10002288.BGIv1.0 annot-version=v1.0 MAELKEVHCQMYRNLLHQDADALSKLMVFCTDNRNGNLNYAQRVFDVIEKPCLFIYNLMIKVNAKQGSFRRCLLLFSRLRGDGLWPDNFTYPFVLKAIGC LGKSMEAERVHGFVAVTGLQCDTYVINSLMDMYAHLGRIDVAQKLFDNMPEKDVISWNVLISGFVRLRKFEDAINAFCCMRKESGFRPDEATVASTLSAC AALKSLELGKQIHRFVTDELECTLIIGNALLDMYCKCGCLEVARELFDTMPAKNVICWTSMVSGYITCGELDEARKLFERSPGRDIVLWTAMINGYVQFN RFDEAVELFRDMQARRIRPDKFLLVALLTGCAQTGALEQGKWIHEYIEENGIVVDAIVGTALIDMYAKCGCIDRALKIFYVLRDKDTASWTAIICALAMN GKTYEALYLFSEMNQVGVRPDDVTYIGVLSACSHGGLVEEGREFFNSMTKLHQIQPKLEHYGCFIDLLGRAGLLNEAEETIQKILYVDPVDVIPIYGSLV SACRIYRNTEIGERVAKKLVTMASDDASVHTLLANIYASTSRWQEVKDVRNKMKDLGVKKTPGCSLIEVDGVVHEFTVGDPSHPAVTEIYSTLDGLASPL LVSEDNTVIKEEFPEVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	0	1
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	1.0	0.8769
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	4.2	0.8213
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10004024 [exp]	8.5	0.7590
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	8.8	0.7940
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10010900 [exp]	8.8	0.6900
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	12.5	0.7747
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	15.2	0.7013
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	17.3	0.7736
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	17.4	0.7547
AT3G46220			unknown protein		Lus10004920 [exp]	19.3	0.7634

Compare expression of checked genes

Lus10002288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.