Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70750 179 / 1e-46 Protein of unknown function, DUF593 (.1) AT5G16720 117 / 6e-27 Protein of unknown function, DUF593 (.1) AT1G74830 86 / 5e-17 Protein of unknown function, DUF593 (.1) AT2G30690 72 / 1e-12 Protein of unknown function, DUF593 (.1) AT1G08800 69 / 8e-12 Protein of unknown function, DUF593 (.1.2) AT1G18990 59 / 1e-08 Protein of unknown function, DUF593 (.1) AT3G54740 52 / 9e-07 Protein of unknown function, DUF593 (.1.2) AT4G13630 49 / 9e-06 Protein of unknown function, DUF593 (.1.2) AT3G11850 46 / 8e-05 Protein of unknown function, DUF593 (.1.2) AT5G06560 45 / 0.0003 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004050 [exp] 1118 / 0 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 72 / 1e-12 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10033854 [exp] 72 / 2e-12 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10005527 [exp] 71 / 5e-12 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10014743 [exp] 68 / 2e-11 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10024869 [exp] 67 / 4e-11 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10018782 [exp] 67 / 4e-11 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10020457 [exp] 57 / 3e-08 AT1G18265 77 / 7e-16 Protein of unknown function, DUF593 (.1) Lus10007082 [exp] 52 / 1e-06 AT1G18265 78 / 2e-16 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129200 [exp] 351 / 8e-107 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 349 / 4e-106 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 235 / 6e-65 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 233 / 2e-64 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 92 / 1e-18 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 83 / 6e-16 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 78 / 2e-14 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 73 / 7e-13 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 66 / 1e-10 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 62 / 1e-09 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10002289 pacid=23171925 polypeptide=Lus10002289 locus=Lus10002289.g ID=Lus10002289.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACAAGTTTGCAACAATGCTCCACAGAAGCACCAACAGCAGAGTGGTGGTGATCTTAGTCTACGCTGTTTTGGAATGGATCCTCATCTTCC TCCTCCTTGTCAACTCCTTCCTCTCCTTCCTCATCTCCCAATTCGCCTCCTACTTCGGCCTCCCGCAACCTTGCCTCCTCTGCTCCCGCATCGACCACCG CCTCATCACTTCCTCCTCCTCTTCCTACACGCACCTCATCTGCGAGTCTCATGCCAAGGAGATTGTCTGCAGTTCCGGATTTGGAATGAAGGATGATGAT AGCGACGACGAAGAACACGTTGAGCGTCAGAAGATTGACGGTGACTGTTTCAGCCTCGGAGATGGAACCGAGGTGGTTTTGAAAGAGGAGGAGTTGTTTA CGGAGCTGGAGTTTGTTCAGAATCCTCCTTCTTCCGATGGTCATCATGACAAGTTTATTGAGTACTGTTTGGGGGAAGATAATTCGCTTGAGATTATAGG GCTTGATTATCAAAATCACGGCGATGATCCTGGTTGTGAGTTTGATAGATTAGTCCCTGTCGAACTCATCGATTCTTCTACTTCTGCTTTCCTGGATGGA TCGTTCAAATCTCGTTTCTCAGAGCTGGAAAATCATCAGAATGAAGGTCTAGTTGATGAAGAAGAAGAAGAAGAAGAAGAAAAAGTTGACGAAGAAGATT CTTCTACTCCTGCTTTCCAGGATGGATCGTTGAAATCTCATGTCTCAGAGCTGGAGAATCATCAGAATGAAGGTCTAGTTGGTGATGATGAAGAAGAACA AGAAGCAGAAAAAGTTGACGAAGAAGGGAAAGTTGGTGAAGAAGAAGACGAAGAAGTTGCATGTACGGAAATGAGTAGAGATGAGAATGTTGAGAGATCT TCAGCTCCGCTTCTTCCAGAGACGAGCACTGTATTAGCTTATAATCCAACCATTACAGAACTAGAGCCCGAGAGATTTGGAGCAGAAGAAGATGTTGCGA TTGAAGGCAAAATTGACAAAGAAGAAGAGGCAGAAATGATCAAGCTAGAGGATCCTCCAGTCCGAGAAGAAGTAGGAGAAGACACTACATTAGTGGTGGT CAATCACGTAGACGAACTTCACGATCTCTCTGTAAAGCACGTTGATGAAGAATCGACTCCATTACTACGCCAGGAAGAAGAAGATCTTTGCTTCGAAAAT GGCAAAGAAACTGAACCTGCAAATCCCCTTCATGAACAATTGCATAGCTCTGCTGTCGGCAATGGACTAAGCGAGTTGCATTCACTATACCCAATGAACG ATTCTAACAATTCAGTCGACAAGAATGGCGAGGCATGTCCAGAACCTACCGACTCATGGGCTGAGGAGTCATTAGATGGAAGTGTACGGAGTGAGACTGA GACCAGTGATCCAGTCGTCACTGTAGAAAAGCTAAAGACAGCGCTGAAGTCTGAGAGAAAAGCGCTGAATGCTCTATATGCAGAGCTGGAAGAAGAGAGG AACGCCTCAGCAATAGCTGCAAACCAGACCATGGCAATGATAAACCGGCTTCAAGAAGAAAAGGCAGCAATGCAGATGGAGGCATTACAGTATCAGAGAA TGATGGAGGAACAGTCCGAGTATGACCAGGAGGCCTTACTGCTTCTGAACGAGCTGATGCTCAAGAGGGAAAAGGAGAAGCAAGATCTTGAAAAGGAGTT GGATGTGTATCGGAAGAGACTTCTGGACTATGATGCCAAGGAGAAGCTAAGATTTATGAGAACAAGAAGAAGTATGAATTCCTCTTCTACTACTACTTGC AGCAATGGAGAAGAAATCGACGAGTTATCGTCGATCGACCTTAATCGTGAGGCTAAGGACGAGAGTGGGAGCGGGAGCTTGAGCGAGAATCCAGAAAGCA GCAATGATCATAGTAGTAGTGTTCATCATCATGATGATGATGAGAATATCAACTTGGAGGAAATAGCTATGGACTGTGTGAAGCAAATGAGTTCGCTTGA TGATTCATTGGCCGAGTTTGAAGAAGAGAGGCTTTCGATACTAGATCAGTTGAAAATGTTGGAGGAGAAGCTACTCAACTTAAACGACACGAACGAGGTA ACAGATGATGTTGATTCGGTAGAGGAAAATGGAGGTTCAAATGAGCTATCATCGAATGGACACGATCACCCGGAGAGGAAAACGATGGGATCAATGGCGA AGAGCCTACTACTACCTTTGTTGGATGCTGCTAAGGATGACGAGACGGAGGAAGGATTGATCAGCGATAATAACAATGGGGATGAATCCGGAATAGAAAA TTCTTCGATCTGCAGATTTGACAGCAAGCAGCTAGCGATTGAAGACGAAGTAGACCACGTGTATGAAAGGCTTCAAGCTCTTGAAGCTGACAGGGAGTTC CTTAAACACTGTATGAGCTCGATCCAAAAGGGTGACAAAGGAATGGACCTTCTCCAGGAAATACTACAGCATCTGCGTGATCTGAGATCGGTGGAGATAC GCGTCAGGAGCATGAGTGAGAGCCCTCTGAGTTGA
AA sequence Show only first row Show all	>Lus10002289 pacid=23171925 polypeptide=Lus10002289 locus=Lus10002289.g ID=Lus10002289.BGIv1.0 annot-version=v1.0 MAANKFATMLHRSTNSRVVVILVYAVLEWILIFLLLVNSFLSFLISQFASYFGLPQPCLLCSRIDHRLITSSSSSYTHLICESHAKEIVCSSGFGMKDDD SDDEEHVERQKIDGDCFSLGDGTEVVLKEEELFTELEFVQNPPSSDGHHDKFIEYCLGEDNSLEIIGLDYQNHGDDPGCEFDRLVPVELIDSSTSAFLDG SFKSRFSELENHQNEGLVDEEEEEEEEKVDEEDSSTPAFQDGSLKSHVSELENHQNEGLVGDDEEEQEAEKVDEEGKVGEEEDEEVACTEMSRDENVERS SAPLLPETSTVLAYNPTITELEPERFGAEEDVAIEGKIDKEEEAEMIKLEDPPVREEVGEDTTLVVVNHVDELHDLSVKHVDEESTPLLRQEEEDLCFEN GKETEPANPLHEQLHSSAVGNGLSELHSLYPMNDSNNSVDKNGEACPEPTDSWAEESLDGSVRSETETSDPVVTVEKLKTALKSERKALNALYAELEEER NASAIAANQTMAMINRLQEEKAAMQMEALQYQRMMEEQSEYDQEALLLLNELMLKREKEKQDLEKELDVYRKRLLDYDAKEKLRFMRTRRSMNSSSTTTC SNGEEIDELSSIDLNREAKDESGSGSLSENPESSNDHSSSVHHHDDDENINLEEIAMDCVKQMSSLDDSLAEFEEERLSILDQLKMLEEKLLNLNDTNEV TDDVDSVEENGGSNELSSNGHDHPERKTMGSMAKSLLLPLLDAAKDDETEEGLISDNNNGDESGIENSSICRFDSKQLAIEDEVDHVYERLQALEADREF LKHCMSSIQKGDKGMDLLQEILQHLRDLRSVEIRVRSMSESPLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	0	1
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	2.6	0.8542
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	2.6	0.8982
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	4.0	0.8892
AT3G54030			Protein kinase protein with te...		Lus10017198 [exp]	4.0	0.8595
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	4.5	0.8594
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	4.9	0.8545
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	6.5	0.8753
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	6.7	0.8427
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	6.8	0.8324
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	8.9	0.8473

Compare expression of checked genes

Lus10002289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.