Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66330 351 / 6e-119 senescence-associated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004049 [exp] 648 / 0 AT1G66330 423 / 2e-146 senescence-associated family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129100 [exp] 426 / 9e-148 AT1G66330 475 / 2e-166 senescence-associated family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002290 pacid=23171932 polypeptide=Lus10002290 locus=Lus10002290.g ID=Lus10002290.BGIv1.0 annot-version=v1.0 ATGGAACTCAGTGCAAGCAAGGTCTCAACCAGTGCCTTTGCAACCCATAGGAGAGCGAATTCTAAATCACACGGCGTTACATGTTCACTTTCCAAGTCAT GTCCTACACTGCCACAAAGCAAGCTTCAGCAAATTGGGAATGGATGTCTCCCTAATGCGAAACTCTTCTTGTCTGATGAGAGGCTTTGGGGGATCCATGA AAAAGTAACCAATGTCATGGTCTCTCAGCGATCCTCTGTGCTATGTCAATCAACCCGAACTCCTAGAACAAAGGGAAAAGAACGTAGCAAAACTTCCAGA GGGATAATGAGTCTGGATGCCCGGGCACGGAGAGATGTAGCTATTATTGGGTCTGAATTTCTCAAACTGGATGCTCGAGCTAGGGAGGACACAATGAAAA TTGACAGCGATGTGAAAATGAAAGCAGAGCGTCTTCACCATATCACAACTATCTTAAAGGACAGAGCTCAGTCAAGATTGAAGAAAGCTGCCGCTAAGCA CTGGAGTAATGGTGCTCTAAAGGATGATCTGCGTAGAGCTGACTTTCGAGCAAAGCAGCGTGCCATGGAAGATGCCCTAATGGCACTGGAGTTTGTGCAG AACGTCCATGACAGGATGGTTTCAAAGATCTCCCTGAGTCAGCAATACGATGTGGCTGATAGGATGATGGGACAAATAACCCTAGAGAAAAATGGAAGAA CTTCAGACATTTTCCCTGGAGAAGTATCTTCGGACCGCATTGCTGCTATTCAGGATGCTTATTTTAGCATGGCATCTGCACTCTCTGAAGCCGATGGAAT AGACTACAGCGATCCTGAAGAGCTGGAACTTCTGATCACAACTCTCATTGATCTTGATGCTATGGATGGTAAAACTAGTGTGTCACTGTTAGCAGAATGT TCGAGCTCCCCAGACGAGAGCACTAGGCAAGCGTTAGCCAATGCATTAGCAGCAGCTCCATCGATGTGGGCTTTGGGTAATGCAGGGATGGGAGCACTTC AGAGACTGGCTGAAGATAGAAACCCGGCGATTGCAGCTGCAGCAGCCAACACAATCTATGAACTGAAGAAGCAGTGGGAAATAGAGGAGGGGGATAATTG GAGGTTTATGGTGAACCTAAAACCAGAAGAATCTGAAGGAGATATCCCAGAAGACGATGCGAGCTGA
AA sequence Show only first row Show all	>Lus10002290 pacid=23171932 polypeptide=Lus10002290 locus=Lus10002290.g ID=Lus10002290.BGIv1.0 annot-version=v1.0 MELSASKVSTSAFATHRRANSKSHGVTCSLSKSCPTLPQSKLQQIGNGCLPNAKLFLSDERLWGIHEKVTNVMVSQRSSVLCQSTRTPRTKGKERSKTSR GIMSLDARARRDVAIIGSEFLKLDARAREDTMKIDSDVKMKAERLHHITTILKDRAQSRLKKAAAKHWSNGALKDDLRRADFRAKQRAMEDALMALEFVQ NVHDRMVSKISLSQQYDVADRMMGQITLEKNGRTSDIFPGEVSSDRIAAIQDAYFSMASALSEADGIDYSDPEELELLITTLIDLDAMDGKTSVSLLAEC SSSPDESTRQALANALAAAPSMWALGNAGMGALQRLAEDRNPAIAAAAANTIYELKKQWEIEEGDNWRFMVNLKPEESEGDIPEDDAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66330			senescence-associated family p...		Lus10002290 [exp]	0	1
AT2G47210	MYB		myb-like transcription factor ...		Lus10034713 [exp]	2.2	0.8770
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	10.4	0.8276
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	11.0	0.8391
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	13.0	0.8308
AT2G17972			unknown protein		Lus10013879 [exp]	14.2	0.8463
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	14.5	0.8116
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10010082 [exp]	14.8	0.8418
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	16.6	0.8516
AT1G66330			senescence-associated family p...		Lus10004049 [exp]	17.8	0.8323
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	22.5	0.8231

Compare expression of checked genes

Lus10002290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.