Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27040 442 / 2e-159 VPS22 EAP30/Vps36 family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004047 [exp] 439 / 1e-158 AT4G27040 380 / 1e-135 EAP30/Vps36 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G424600 [exp] 452 / 3e-163 AT4G27040 437 / 1e-157 EAP30/Vps36 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04157 [flax] [poplar] EAP30 EAP30/Vps36 family
Representative CDS sequence Show only first row Show all	>Lus10002292 pacid=23171940 polypeptide=Lus10002292 locus=Lus10002292.g ID=Lus10002292.BGIv1.0 annot-version=v1.0 ATGAAAAGGCGACCTGGAATCGGCGGCCTACAAAAAGCTGCTAACGCTCGGGATCAATATCGGTTACTCGGAGAAAATGTAGCCAAGCTGAGAACAGACC TCATGAAAGAGCAGCTCGCCACTTTCCGCAATCAGCTCGAAGAATTCGCTCGCAAACACAAGAATGATATTCGCAAGAACCCTACATTTAGGGCACAATT TCATGAGATGTGTGCTAAAGTTGGAGTTGATCCTTTGGCCTCTAACAAAGGTTTCTGGGCGGAGCTGCTAGGGATTGGTGACTTCTATTATGAGCTCGGG GTACAAATTGTGGAGATATGTTTAAATACAAGACCTCACAATGGAGGTCTGATCAACCTGCCTGAGCTCTGCAATCTGCTTCGCCAAAAACGAAAAGGTG ACCGTGAAGCTGTGTCTGAAGATGACTGTTTGCGCGCCATTACTAAACTTAAGGTACTTGGAAGTGGCTTTGAGGTGATATCTGTTGGTAAGAAGAAGCT TGTTCGGTCTGTCCCAACTGAACTGAACAAAGACCATAATGCGATCCTGGAGCTGGCTCAGGCTGAAGGATATGTCACCGTTGATGATGTTGAAAGACGG CTCTCTTGGACAACAGGTCGAGCAATCGGTGCCTTAGATACACTATTGGAGGAAGGTTTTGCGATGGTTGATGATGGCCACAGGGATGGCAAGCGAAGAT ACTGGTTTCCCTGTGTCTCTTCCATATCTGCAGTGGTCGGGCCTGACATGTAA
AA sequence Show only first row Show all	>Lus10002292 pacid=23171940 polypeptide=Lus10002292 locus=Lus10002292.g ID=Lus10002292.BGIv1.0 annot-version=v1.0 MKRRPGIGGLQKAANARDQYRLLGENVAKLRTDLMKEQLATFRNQLEEFARKHKNDIRKNPTFRAQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELG VQIVEICLNTRPHNGGLINLPELCNLLRQKRKGDREAVSEDDCLRAITKLKVLGSGFEVISVGKKKLVRSVPTELNKDHNAILELAQAEGYVTVDDVERR LSWTTGRAIGALDTLLEEGFAMVDDGHRDGKRRYWFPCVSSISAVVGPDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10002292 [exp]	0	1
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	13.0	0.8396
					Lus10021189 [exp]	14.3	0.8435
AT2G13840			Polymerase/histidinol phosphat...		Lus10036157 [exp]	20.9	0.7457
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	22.9	0.8249
AT3G61370			Protein of unknown function (D...		Lus10027936 [exp]	25.0	0.7910
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10040543 [exp]	33.5	0.8151
AT1G48160			signal recognition particle 19...		Lus10011152 [exp]	36.9	0.8223
AT4G16710			glycosyltransferase family pro...		Lus10028587 [exp]	38.3	0.7869
AT2G42730			F-box family protein (.1.2)		Lus10028722 [exp]	50.9	0.7897
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	56.5	0.7856

Compare expression of checked genes

Lus10002292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.