Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 715 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 711 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 518 / 5e-166 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 516 / 5e-165 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 504 / 3e-160 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17750 490 / 2e-155 AtPEPR2 PEP1 receptor 2 (.1) AT3G24240 486 / 2e-153 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 483 / 2e-151 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 479 / 2e-151 Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G73080 471 / 9e-148 ATPEPR1, PEPR1 PEP1 receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004046 [exp] 1805 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 739 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 728 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 647 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 626 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 613 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 587 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 552 / 2e-180 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 463 / 4e-146 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123800 [exp] 838 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 805 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G123700 [exp] 803 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 777 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G122500 [exp] 767 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.012G124300 [exp] 758 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 753 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060084 [exp] 740 / 0 AT4G08850 724 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 728 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G120733 [exp] 725 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002293 pacid=23171942 polypeptide=Lus10002293 locus=Lus10002293.g ID=Lus10002293.BGIv1.0 annot-version=v1.0 ATGAATTCATTAGTATCCAGAAACTTACATGTTCTGTTGCTGCTCTTTATCTCCATCACTGCAGCTGCAAATCAGGAAGCTGAAGCTCTTCTGAAATGGA AATCCACTCTAAACAATCCAACCTATTTCTCCTCGTGGGCTGCTGGAACCGCCCCTTGCGATTCCACCTGGCTCGGAATCTCCTGCAATGGTCAGGGCAG CATTGCCAGCATAACCATTGTCGATTCTGGTCTTAGAGCCACCCTCGACACCTTCAATTTCTCGTCGTTTCCAAACCTTGTCTCTCTCAACCTTAGAAAT AACGCTCTTTATGGGTTCATCCCTTCTCATTTGGCAAACCTTTCCAACCTTTCCTTCCTTGACTTGAGTTGGAACCAATTCTATGGTGGTATCCCATCTG AAATTGGTTCTTTGGCGAGATTGACCTCGCTCTCGTTAGCTAGGAATAACCTCAATGGCTCGATCCCAACTTCCATGTTTAACCTGACGAATTTGTCCCT TCTTAGATTGGATATCAACCAACTGAGTGGCTATGATCCTGAAAAAATCGGAAAGCTGACGTCTTTGACCACCCTCAGGTTGGCATACAACAGCTTTTCC GGTCGGGTACCTGCTGCTATCGGAAACCTGACAAACTTGTCGATCCTGCAGCTTGCCCAGAACTATTTCTCAGGTTCCATTCCAGAAGAGATTTGTTCCT TGAAATCCCTCACAAAGCTCGACTTGGCCATTAATAACCTGACAGGTCCAATTCCACCCTTCATAGGTAACCTGACTCAGCTCAACAATCTCTTCCTTTC CCGGAACAGACTTTCAGGACTGATTCCAAGCGCGATCGGGAATTTGAAGTCTCTCGGTGATCTTCAGCTCTTCACCAACTTCCTGACAGGTTCTATCCCG CCTTCTGTTGGAAACTTGAAAGGGCTGGTCAGCCTGGCTCTTTCAGGAAACCAACTTTCCGGTTCCATTCCTGAAGAAATCGGTGGGTTGGAATCTCTAA TGGTCTTAAACTTGAACACCAACAATCTCACCGGCTCAGTCCCTTCATCAATTGGAAACATCAGCAACATCGCCTATATCGGCTTGGCGGGGAACCAACT CTCCGGAAGTCTGCCTGTAGAGTTCAACAATTTCAAATATCTACGAGGTTTCGATGTTCCTTCGAACAGACTGACCGGCTCTCTTCCTCCAGACATTTGC ATAGGCCGGGTCCTGATCGTCTTCACAGCTTATAACAACTCCTTCACTGGTCCTATGCCCAGAAGCTTAAAGAATTGCAGCAGCTTGAAGAGGCTCAGGC TTAACATGAACCAACTCACAGGAAATATATCTGAATATTTCGGGTATTATCCCGTCCTGAATGTTGTGGACTTGAGCGACAACAGGTTACATGGCGACCT CAAACCATTTCAATGGGACATTCTATACAACTTGTCTAGTCTGGAGATCGCCAGGAACAACCTTTCAGGTGAAATACCGACCGAGGTGTGGAAAACACCA CAGTTGAACTTGTTGGACCTGTCGTCCAACAGACTAACCGGCCCAATTCCAGACGAACTCGGTCGGTTGAGGCTGATCAGCCTTTCCCTGAACGACAACC AACTCTCAGGTCAGGTTCCACTCGGATTGGGGAAGTTATTAGAGCTTGAATCTCTGAATCTGGCTGGAAATAATCTCAATGGTTCGGTTCCGAAACAGCT GGGGAATAGCCCGAAAATCCGGCTGCTGAATCTGAGCACGAATATGTTCACAGGCAGTGTCCCTCCAGACATTGGCAATTTGCAGACTCTTATTACTCTG GATCTCAGCCACAACTCGCTTACCGGAGATATTCCACGAGGGCTCGGAAACTTGTTCTTCTTGGAGACTCTGAACCTCTCCAGGAATTCATTCGTGGGGC CCATTCCCAGCGGCAAATGGCTGAGCTTAGAAGCTGTGAATGTGTCGTATAATCAATTGAAGGGTCCGATTCCTGAGACGGATACCTTCCGTCAAGCTCC TTTCGAATCTTTGAGAAGCAATGAGAATCTCTGCGGCAATAATTCTTTTTTGAATCCTTGCCCGGTGCAGTACAAGCACGAATCTAAAGAAACCAAGCGA CCGAGATACAAGATTGTTTTCCCTACCTTAGCCGGAGGGTTGGTCTTGATTCTGGTGTCGAATGCTGTTGTGTTCGTCATTTATCGAAGACTTAAAGCGA GAGATGCAGACTCGGGGAATTATTATTTGTACATTTTCTCAAGCTGGGGATTAGAGGAAGAAGAGTTGACGTACGAGGGAATTGTTCAGGCTACAGACTC GTTCGATGCCAAGCACATGATCGGATCAGGGTCGTCTGGGTCAGTTTACAAAGCGGTCTTGAACAACAAGGCTGTGGCAGTGAAGAAACTCCATGATAAA TCCGACGAGGAAGCAGGGAGTATCAGGTCGAATTGGAAAGCGTTCAGGAGCGAGATAAGAGCGCTGACGAATATCAAGCATCGAAACATCGTGAAGCTGT ATGGGTACTTCTTGAAGGTCGATCACTCGCTTCTGGTGTACGAATTCATTGAGAGAGGAAGCCTGAGGATGGTTCTGAGAGACAACGAGCAGGCGAAGGA ATTGGACTGGTGCAAGAGGGTGAATGTCATCAAAGGAGTGGCGAGTGCGCTGCAATATATGCACCACGAATGTTGTCCACCATTTATTCACAGAGATATC TCTCCGAACAATGTGTTGTTGGATTCGGACCATGAGGCTCGCATCTCCGACTTTGGCACTGCTCGGTTCCTGAGGCCGGACGACCGAAGCTCCACCTCGT TTGCCGGAACTTTTGGCTATGTGGCTCCAGAGAGAGCTTACTCGGAGAAAGTGGATGAGAGATGCGATGTGTACAGCTTTGGAGTTGTGGCACTTGAAGT GATATTGGGGAAGCATCCAGGAGACCTGATCTCATCGCTTTCAACACCGTCTTCTTCTGCTTCAGAGGTCCGGCTGGAAGACTGGATTGATGATAGGATC TTGGGACCAAGTGAGGTTGGTGAAGTCGATAAGGAAGTGGTTGCGATCGCAAGGCTGGCGTTAGCTTGTGTGCATGTTGAACCGAGTTCTCGACCGACAA TGCAACAAGTTACCATGGAGCTCGTCCCATTTGTGATGCCTCCATTGACTCATCCATTCTCTCAAGTCACTTTGGAGGAGCTGCTCTTGGCTTCTCCCAT AACAATGCCCTAA
AA sequence Show only first row Show all	>Lus10002293 pacid=23171942 polypeptide=Lus10002293 locus=Lus10002293.g ID=Lus10002293.BGIv1.0 annot-version=v1.0 MNSLVSRNLHVLLLLFISITAAANQEAEALLKWKSTLNNPTYFSSWAAGTAPCDSTWLGISCNGQGSIASITIVDSGLRATLDTFNFSSFPNLVSLNLRN NALYGFIPSHLANLSNLSFLDLSWNQFYGGIPSEIGSLARLTSLSLARNNLNGSIPTSMFNLTNLSLLRLDINQLSGYDPEKIGKLTSLTTLRLAYNSFS GRVPAAIGNLTNLSILQLAQNYFSGSIPEEICSLKSLTKLDLAINNLTGPIPPFIGNLTQLNNLFLSRNRLSGLIPSAIGNLKSLGDLQLFTNFLTGSIP PSVGNLKGLVSLALSGNQLSGSIPEEIGGLESLMVLNLNTNNLTGSVPSSIGNISNIAYIGLAGNQLSGSLPVEFNNFKYLRGFDVPSNRLTGSLPPDIC IGRVLIVFTAYNNSFTGPMPRSLKNCSSLKRLRLNMNQLTGNISEYFGYYPVLNVVDLSDNRLHGDLKPFQWDILYNLSSLEIARNNLSGEIPTEVWKTP QLNLLDLSSNRLTGPIPDELGRLRLISLSLNDNQLSGQVPLGLGKLLELESLNLAGNNLNGSVPKQLGNSPKIRLLNLSTNMFTGSVPPDIGNLQTLITL DLSHNSLTGDIPRGLGNLFFLETLNLSRNSFVGPIPSGKWLSLEAVNVSYNQLKGPIPETDTFRQAPFESLRSNENLCGNNSFLNPCPVQYKHESKETKR PRYKIVFPTLAGGLVLILVSNAVVFVIYRRLKARDADSGNYYLYIFSSWGLEEEELTYEGIVQATDSFDAKHMIGSGSSGSVYKAVLNNKAVAVKKLHDK SDEEAGSIRSNWKAFRSEIRALTNIKHRNIVKLYGYFLKVDHSLLVYEFIERGSLRMVLRDNEQAKELDWCKRVNVIKGVASALQYMHHECCPPFIHRDI SPNNVLLDSDHEARISDFGTARFLRPDDRSSTSFAGTFGYVAPERAYSEKVDERCDVYSFGVVALEVILGKHPGDLISSLSTPSSSASEVRLEDWIDDRI LGPSEVGEVDKEVVAIARLALACVHVEPSSRPTMQQVTMELVPFVMPPLTHPFSQVTLEELLLASPITMP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	0	1
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	3.9	0.7357
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	7.0	0.7174
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	8.3	0.7566
					Lus10003693 [exp]	12.0	0.7062
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10005117 [exp]	13.0	0.6859
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	14.5	0.7398
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	17.3	0.6738
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	18.9	0.7357
AT5G59790			Domain of unknown function (DU...		Lus10030328 [exp]	20.4	0.6188
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10042914 [exp]	23.3	0.7323

Compare expression of checked genes

Lus10002293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.