Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66345 446 / 6e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 167 / 1e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G55840 157 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 147 / 1e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G26680 143 / 6e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G09900 143 / 1e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G40400 143 / 1e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 143 / 3e-36 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03560 143 / 3e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 142 / 3e-36 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004045 [exp] 893 / 0 AT1G66345 442 / 6e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 169 / 3e-46 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 169 / 7e-45 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 157 / 9e-41 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 155 / 6e-40 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 154 / 1e-39 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 148 / 8e-38 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013077 [exp] 147 / 8e-38 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 147 / 2e-37 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090800 [exp] 543 / 0 AT1G66345 499 / 1e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 172 / 3e-46 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.014G040200 [exp] 164 / 6e-43 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 154 / 7e-40 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 154 / 1e-39 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 152 / 2e-39 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 150 / 7e-39 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.011G003700 [exp] 149 / 1e-38 AT1G11710 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 147 / 6e-38 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 147 / 2e-37 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002294 pacid=23171946 polypeptide=Lus10002294 locus=Lus10002294.g ID=Lus10002294.BGIv1.0 annot-version=v1.0 ATGAGTTTCCTCTGCCGGCTCGTTCCACTTGCTACTCCCTCAGCATTCACGAGTCGCAGCTTCCGATCTCTCCCCAGCCTGCGGCTACCACCTCCTCCAA CCTTCCTCCTCTCCGGTCTAGAAAATCAAACGGTCGTGAAATACATCTCCAATTCCCTGAGAACCGGCTGTAATTGGGATTCCCTCACTGAAAAATTCGG TTCCATAACCTTCAACGACTCACTAACCGGACAAATCTTGCTAGAACTGAGAGAGCCCCACGACGCCAAACGAGCTCTAGGGTTCTTCCACTGGTCAGCA GCTCAACGGCGTAACAACACCCTCCACGGCGTCTACACATACTGCATCATGGTCCACATCCTCGTCGGAGCACGGTTGATCACCGACGCTCGAGCATTGC TCGAATCGATCCTCAAGAGAAACAACCACCACGGCTCGAAAAAATTCGAGATTGCGGACTCGCTGATCGACAGTTACAGAGTCACGATCTCGAACCCGCT CGTGTTCAATCTCTTGGTTCAGGGATATGCCAAGCTGAGATTGCTCGAGGTTGGATTCGAGGTCAGCTGTTACTTGGAAGATCGTCACGGCGTTTCCTTA ACGTTGATCAGTTACAACACGCTGATTCATTTCCTTCAGAGATCTCACGAGATTGAGCTGATGTGGAAGGTTTACGAGCGGATGATTAGCAGGAGGATAT ACCCGGACGAATCGACAGTTAGAACTGTGGTTGGTGGATTATGTAAAAAAGGGAAGTTGCAGGAATTGATTGGGATATTGGATAAGATTCAATGCTCGAC GAATCGCTCTCCTATGATGATCGTTAACACTGGTTTGATTCTGAGGATTTTGGAACAGGAAGAAGAAGGAAGGATTGAAGCTGCGATGGGACTGTTGAGA TTGATGCTGCAGAAGAACATGATAATCGACACGGTGGCATACTCCTTGATCGTTCACGCCAAGGTGAAACTCGGCGACTTGAGTTCCGCACACCAGGTGT TCGACGAAATGCTCAAAAGAGGATTCGACGTGAATTCGTTTTGTTACACTTCATTCGTGGAGGGTTACTGCAAGTCCGGCAATGTCGACGAAGCGAACCG GATGTTCGACGAAATGAAAAGCAACGGATTGAAACCCTATCGCGAAACGTTCAACCATCTAATCCGAGGATGCGCAGATGCATGGAGAGCGAAAGAATGT CTCGAGTATTGTTCCGAGATGGTGAGCGAGGGATTCAGACCGTCAATTTCTGCGTTCAACGAAATGCTGACGAGATTGAACGAGGCGAACGATGTGAACC GAGCTAACGAGATGCTGACGTGCATGATGGATAAGGGCTTGTTGTCGCCTGACGAAGTGACCTACTCGAGGCTGATGGATGCTTACGCGAGAAGCGGCGA GGTTGAGGGAGTGGTGAAACTGTACTATGAGTTGGAGTATAAAGGTATTTGTCCTGGGGAACTGGGCTTTAGGGCTTTGATTAGTAGTTTGAAAGAGTCT GGGAAGGTTGAGGAAGCAAGGAAGTTCTTGAAGGTTATGAGAGATCGTGGTTTGAGTCCAGGAAAAGATGTCTGTTAG
AA sequence Show only first row Show all	>Lus10002294 pacid=23171946 polypeptide=Lus10002294 locus=Lus10002294.g ID=Lus10002294.BGIv1.0 annot-version=v1.0 MSFLCRLVPLATPSAFTSRSFRSLPSLRLPPPPTFLLSGLENQTVVKYISNSLRTGCNWDSLTEKFGSITFNDSLTGQILLELREPHDAKRALGFFHWSA AQRRNNTLHGVYTYCIMVHILVGARLITDARALLESILKRNNHHGSKKFEIADSLIDSYRVTISNPLVFNLLVQGYAKLRLLEVGFEVSCYLEDRHGVSL TLISYNTLIHFLQRSHEIELMWKVYERMISRRIYPDESTVRTVVGGLCKKGKLQELIGILDKIQCSTNRSPMMIVNTGLILRILEQEEEGRIEAAMGLLR LMLQKNMIIDTVAYSLIVHAKVKLGDLSSAHQVFDEMLKRGFDVNSFCYTSFVEGYCKSGNVDEANRMFDEMKSNGLKPYRETFNHLIRGCADAWRAKEC LEYCSEMVSEGFRPSISAFNEMLTRLNEANDVNRANEMLTCMMDKGLLSPDEVTYSRLMDAYARSGEVEGVVKLYYELEYKGICPGELGFRALISSLKES GKVEEARKFLKVMRDRGLSPGKDVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66345			Pentatricopeptide repeat (PPR)...		Lus10002294 [exp]	0	1
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	6.3	0.8494
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	8.3	0.8576
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10031504 [exp]	10.7	0.8063
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	17.7	0.8446
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	18.4	0.8163
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	18.8	0.8490
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	24.2	0.8446
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	24.4	0.8333
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	28.5	0.8065
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	33.9	0.8052

Compare expression of checked genes

Lus10002294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.