Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66250 753 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 695 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G11820 579 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 456 / 5e-157 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 347 / 6e-115 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 345 / 4e-113 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 339 / 3e-111 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 334 / 5e-110 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 323 / 8e-106 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 305 / 4e-98 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004044 [exp] 970 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10013465 [exp] 740 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 707 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 679 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 558 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 481 / 2e-166 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 445 / 7e-153 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 345 / 1e-113 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 331 / 1e-108 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086400 [exp] 818 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 816 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 754 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 732 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 588 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 583 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 485 / 2e-168 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 464 / 2e-160 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 345 / 7e-114 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 332 / 1e-108 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10002295 pacid=23171933 polypeptide=Lus10002295 locus=Lus10002295.g ID=Lus10002295.BGIv1.0 annot-version=v1.0 ATGGCTGTATCAGATTCATCCCAACTCTTTCTTGTTCTTGCTCTCTTTCTCTTCGTCGCTGCTGCTGCTGCAGCTACTCCTGATGATGAAGAGCCATTCA TTGGTGTAAACATAGGCACAGACCTATCAGACATGCCACATCCAACTCAAGTAGTAGCCCTTCTCAAAGCACAACAGATCAAGAACATCCGCCTATACGA TGCAGATCGCGGAATGCTAGTCGCCCTTGCTAATTCCGGCATCAAAGTTATGGTATCTGTACCTAACGATCAGCTTCTTGGCATAGGCCAATCCAACGCC ACAGCAGCCAACTGGGTCTCCAAAAACGTCGTTGCTCACTACCCTGCCACCAACATCACAGCCATCTGTGTCGGTTCCGAAGTCCTCAGCACCCTCCCCA ATGCAGCACCGGTCCTAGTCGACGCCCTTAAGTACATCCACTCGGCACTTGTAGCCTCGAATCTCGATCGTCAGATCAAAGTCTCGACTCCTCTCCCTTC GTCATTAATCCTTGACTCGTTCCCTCCTTCCCAGGCGTTCTTTAACCGGTCTTTGAACTCGGTCATGATCCCGATGCTGAGTTTCTTGCAGTCCACGGGT TCTTACCTCATGCTCAACATCTACCCTTACTATGACTATATGCAATCCAACGGTGTTATACCTTTGGACTATGCATTACTCAAGCCGCTCCCTCCGAACA AAGAAGCTGTAGATGCCAACACATTGGTTCACTACTCAAACGTCTTCGATGCTATGGTTGATGCTGCCTATTTCGCAATGTCCTTCCTCAACTTCACCAA CATCCCGGTTGTTGTGACCGAATCGGGTTGGCCATCCAAAGGCGATCCAAACGAACCGGATGCTACTCTAGACAATGCCAATACTTACAACAGCAATCTG ATCAGGCACGTGTATAACAAGACCGGGACACCGAAGCATCCTGGGATTGCAGTGAGTACTTTCATTTACGAGCTTTACAACGAAGATGTGAAGGCAGGAT CAGTGTCCGAGAAGAACTGGGGTCTGTTTAATGCCAATGGGGAGCCGGTTTATAACTTGCGTTTGACCGGATCGGGGTCTTTGTTGGCGAATGATACTGC GAATGAAACGTACTGCACAGTTCGAGATGGTGCTGATCCTAAGATGTTGCAAGCTGCTCTGGATTGGGCGTGTGGACCGGGAAAAGTTAATTGTTCTGCA TTGTTGCAAGGGGAGGCGTGTTATGAACCGGATAATGTGATTGCCCATGCTACCTATGCGTTCGATGCTTACTATACTCAGATGGGCAAAAGTCCTGATT CTTGTGACTTCAAAGGGGTTGCTACGATCAGTACCACAAATCCAAGTCATGGTACTTGTATATACCCTGGAAGTAGTGGGAAGATCAATGGGACGATGGT GAATGTGACTGCTCCATCAATGAACTCAACTGCTTCGGAGGCACCTGCTGCTGTAGATCATAGTGTCGTTCATTTGGCAATGCTTGTGGGATCTTTTGTG ATGATGAGCTTATTAGCTTCGTTGTAG
AA sequence Show only first row Show all	>Lus10002295 pacid=23171933 polypeptide=Lus10002295 locus=Lus10002295.g ID=Lus10002295.BGIv1.0 annot-version=v1.0 MAVSDSSQLFLVLALFLFVAAAAAATPDDEEPFIGVNIGTDLSDMPHPTQVVALLKAQQIKNIRLYDADRGMLVALANSGIKVMVSVPNDQLLGIGQSNA TAANWVSKNVVAHYPATNITAICVGSEVLSTLPNAAPVLVDALKYIHSALVASNLDRQIKVSTPLPSSLILDSFPPSQAFFNRSLNSVMIPMLSFLQSTG SYLMLNIYPYYDYMQSNGVIPLDYALLKPLPPNKEAVDANTLVHYSNVFDAMVDAAYFAMSFLNFTNIPVVVTESGWPSKGDPNEPDATLDNANTYNSNL IRHVYNKTGTPKHPGIAVSTFIYELYNEDVKAGSVSEKNWGLFNANGEPVYNLRLTGSGSLLANDTANETYCTVRDGADPKMLQAALDWACGPGKVNCSA LLQGEACYEPDNVIAHATYAFDAYYTQMGKSPDSCDFKGVATISTTNPSHGTCIYPGSSGKINGTMVNVTAPSMNSTASEAPAAVDHSVVHLAMLVGSFV MMSLLASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10002295 [exp]	0	1
AT3G29310			calmodulin-binding protein-rel...		Lus10038064 [exp]	1.0	0.9210
AT3G61610			Galactose mutarotase-like supe...		Lus10012640 [exp]	7.1	0.8769
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	11.5	0.9192
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	14.3	0.9133
AT5G67200			Leucine-rich repeat protein ki...		Lus10036426 [exp]	14.9	0.8979
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	15.1	0.9201
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	15.9	0.9172
AT3G18800			unknown protein		Lus10020872 [exp]	16.1	0.9114
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10025920 [exp]	16.5	0.8263
AT4G03100			Rho GTPase activating protein ...		Lus10024768 [exp]	16.5	0.9101

Compare expression of checked genes

Lus10002295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.