Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 434 / 4e-149 RKL1 receptor-like kinase 1 (.1) AT3G17840 421 / 5e-144 RLK902 receptor-like kinase 902 (.1) AT3G02880 404 / 9e-138 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 403 / 1e-137 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 366 / 1e-122 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 356 / 9e-119 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 353 / 6e-118 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 345 / 2e-114 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 335 / 9e-111 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 334 / 2e-110 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004040 [exp] 646 / 0 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 483 / 6e-169 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10017996 [exp] 473 / 2e-164 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 467 / 1e-162 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 427 / 1e-149 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10031337 [exp] 424 / 3e-145 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10017756 [exp] 387 / 6e-131 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041992 [exp] 371 / 2e-130 AT3G17840 343 / 2e-115 receptor-like kinase 902 (.1) Lus10021673 [exp] 371 / 7e-125 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086100 [exp] 502 / 2e-176 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 500 / 2e-175 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 497 / 6e-174 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.015G035500 [exp] 496 / 1e-173 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.013G158800 [exp] 380 / 3e-128 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 377 / 4e-127 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 376 / 6e-127 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 366 / 4e-123 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 359 / 2e-120 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 358 / 8e-120 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10002299 pacid=23171939 polypeptide=Lus10002299 locus=Lus10002299.g ID=Lus10002299.BGIv1.0 annot-version=v1.0 ATGGCGAGCAAGAGTCTGGTGTTCTTCGGGAACACACCGAGGACGTTCGATCTGGAGGATTTGCTAAGGGCGTCTGCTGAAGTGTTGGGGAAAGGAACAT TCGGGACGACGTACAAGGCTACGCTGGAGATGGGTGTGGTGATGGCGGTGAAGAGGTTGAAGGAGGTGATCGTGAGTGAGAAGGAGTACAGGGAGAAGAT TGAGGTAGTTGGGAAGATGAACGATGAGAATCTGGTGATGTTGAAGGCTTACTATTTCAGCAAGGATGAAAAGCTTCTTGTGTATGAGTACATGTCCATG GGAAGCTTATCTGCACTTTTACATGGAAACAGAGGAGCTGGAAGGACGCCATTGAACTGGGACACAAGGTCAACCATCGCACTCGGAGCAGCCAAAGGAA TATCATATCTCCACTCCCAAGGCTCGTCAATCTCCCACGGCAACATCAAGTCATCAAACATCCTTCTCACCAAATCCTACGAAGCCCGCGTCTCCGATTT CGGCCTAGCGCAGCTAGCCGGAGCTGCCCCCAACACTAGCCGAGTCGACGGGTACCGTGCGCCTGAAGTAACCGATGCTCACAAGGTGTCCCAAAAGGCA GACGTCTACAGCTTCGGCGTCCTCATCCTCGAACTCCTCACCGGTAAGGCTCCCACCCATTCGTTGACCAACGACGAAGGGGTTGACCTTCCGCGGTGGG TCCAATCCGTAGTGAGAGAGGAGTGGACTGCTGAGGTGTTCGATCTCGAGTTGCTTAGGTACCAGAATGTCGAGGAAGAGATGGTTGAGCTTTTGCAGCT TGCCATTGACTGCACTGCTCAGTATCCGGACAAACGCCCTTCCATGGCCGAGGTGGCTCGCAGGATTGAAGAGATTTGTCGGTCCACTAGCTCTGAAAAC GGCGGCATTGTTCCGGATGAATCGTCAGTCGACTCAGGGGTGCCAGCAGCAGCATCAGGGTGA
AA sequence Show only first row Show all	>Lus10002299 pacid=23171939 polypeptide=Lus10002299 locus=Lus10002299.g ID=Lus10002299.BGIv1.0 annot-version=v1.0 MASKSLVFFGNTPRTFDLEDLLRASAEVLGKGTFGTTYKATLEMGVVMAVKRLKEVIVSEKEYREKIEVVGKMNDENLVMLKAYYFSKDEKLLVYEYMSM GSLSALLHGNRGAGRTPLNWDTRSTIALGAAKGISYLHSQGSSISHGNIKSSNILLTKSYEARVSDFGLAQLAGAAPNTSRVDGYRAPEVTDAHKVSQKA DVYSFGVLILELLTGKAPTHSLTNDEGVDLPRWVQSVVREEWTAEVFDLELLRYQNVEEEMVELLQLAIDCTAQYPDKRPSMAEVARRIEEICRSTSSEN GGIVPDESSVDSGVPAAASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	0	1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10024987 [exp]	2.6	0.9623
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	3.7	0.9621
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	5.2	0.9505
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	5.2	0.9609
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	8.8	0.9500
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Lus10003029 [exp]	9.0	0.9141
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	9.4	0.9555
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	10.1	0.9308
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	12.7	0.9519
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	12.7	0.9334

Compare expression of checked genes

Lus10002299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.