Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 414 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 381 / 5e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 382 / 8e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 368 / 9e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 354 / 3e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 350 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 268 / 2e-88 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G80820 248 / 2e-80 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT1G15950 247 / 6e-80 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002302 [exp] 589 / 0 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 581 / 0 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 575 / 0 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026072 [exp] 546 / 0 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 426 / 2e-150 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 416 / 2e-146 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 385 / 1e-134 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 375 / 2e-123 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10019732 [exp] 342 / 2e-117 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057500 [exp] 444 / 8e-158 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 442 / 6e-157 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 421 / 9e-149 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 419 / 7e-148 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 417 / 2e-147 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G120200 [exp] 265 / 2e-87 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G138600 [exp] 258 / 1e-84 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.001G045000 [exp] 253 / 1e-82 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 253 / 2e-82 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 253 / 3e-82 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10002300 pacid=23180885 polypeptide=Lus10002300 locus=Lus10002300.g ID=Lus10002300.BGIv1.0 annot-version=v1.0 ATGATCGGCGAAGGAAGAGTAGTATGTGTGACGGGCGGGTCGGGTTACATAGCATCGTGGATCATCAAGCTTCTCTTGGAACGCGGCTATACTGTCAAAA CCACTGTTCGCGATCCAACTGATAAAAGCAAGACCCAACACTTACTTTCCCTTGATGGAGCGAGTGAGAGGCTGACGCTGTACAAAGCAGATCTTAATGA AGATGGCTGTTTTGATTCTACCGTCGACGGATGCGAAGGCGTCTTCCATACTGCTTCCCCTTGTTTCTTTCAAACTACCAACCCGCAGGCAGATTTAATT GAGCCCGCAGTGAAGGGCACACTCAGCGTTCTGAAATCATGTGCAAAAGTTCCCTCAATCAAGAGAGTTGTTCTGACTGCTTCTATGGCTTCAGTAATAT GTAATGGGAGGCCTCTTTCCCCTGGTGTTGTGGTCGATGAGACTTGGTTCTCTGATCCTGAATTTTGCGAGAAGAACCAGCATTGGTACATGCTTTCGAA AACTTTGGCTGAAGAGGCTGCCTGGAAATTTGCCAAAGAGAATGGGATTGATCTTGTAACGATTAACCCGGGATTCGTAATCGGTCCTTACCTACAGAAA TCTCTTAATTTCACAGTGGAGGAGGTTCTCAGGATTGTAAACGGAACGCGAGAATTCCCAGGCGAAAGCTATAGATTTGTTGATGTACGAGATGTGGCTA ATTCACATATTCTTGCACTTGAGATCCCATCAGCCAGTGGGAGATATTGCGTAGTTGGAAGAATGGCTCACTATACTGAGGTTCTGGAAATTTTGCATGA ACATTACCCCAATTTACAAATAGCTGCAAAATGGGAAAGTGGCAAGACATCTCAGCCAACATGCAAGATTTCTCAAGAGAAGGCCAAGAGTCTGGGCGTC AACTTCACTCCTCTGGAGGTGAGTCTTAAGGACACCATAGAATGTTTCAAGGAGAAGGGTGTTCTCAGATTCTGA
AA sequence Show only first row Show all	>Lus10002300 pacid=23180885 polypeptide=Lus10002300 locus=Lus10002300.g ID=Lus10002300.BGIv1.0 annot-version=v1.0 MIGEGRVVCVTGGSGYIASWIIKLLLERGYTVKTTVRDPTDKSKTQHLLSLDGASERLTLYKADLNEDGCFDSTVDGCEGVFHTASPCFFQTTNPQADLI EPAVKGTLSVLKSCAKVPSIKRVVLTASMASVICNGRPLSPGVVVDETWFSDPEFCEKNQHWYMLSKTLAEEAAWKFAKENGIDLVTINPGFVIGPYLQK SLNFTVEEVLRIVNGTREFPGESYRFVDVRDVANSHILALEIPSASGRYCVVGRMAHYTEVLEILHEHYPNLQIAAKWESGKTSQPTCKISQEKAKSLGV NFTPLEVSLKDTIECFKEKGVLRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	0	1
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	1.4	0.8991
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	3.5	0.8775
AT5G35080			unknown protein		Lus10008819 [exp]	5.0	0.8426
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	5.5	0.8674
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	6.9	0.8519
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	7.3	0.8408
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	7.8	0.7752
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	8.8	0.8231
AT4G35360			Uncharacterised conserved prot...		Lus10013846 [exp]	8.8	0.8080
AT3G55600			Membrane fusion protein Use1 (...		Lus10037405 [exp]	8.9	0.8112

Compare expression of checked genes

Lus10002300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.