Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 397 / 1e-138 SAG12 senescence-associated gene 12 (.1) AT3G48340 369 / 2e-127 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 372 / 3e-127 Granulin repeat cysteine protease family protein (.1) AT5G50260 369 / 3e-127 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48350 350 / 4e-120 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT2G27420 349 / 6e-120 Cysteine proteinases superfamily protein (.1) AT4G35350 345 / 5e-118 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G43060 348 / 6e-118 Granulin repeat cysteine protease family protein (.1) AT3G49340 343 / 1e-117 Cysteine proteinases superfamily protein (.1) AT3G19400 340 / 7e-116 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026073 [exp] 686 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10032406 [exp] 660 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 653 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10029799 [exp] 651 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10042295 [exp] 650 / 0 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10020722 [exp] 650 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 649 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 644 / 0 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10009145 [exp] 641 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089100 [exp] 546 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 546 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 535 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 535 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 535 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 533 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 485 / 2e-173 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 469 / 5e-168 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 464 / 9e-166 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 461 / 4e-164 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10002301 pacid=23180865 polypeptide=Lus10002301 locus=Lus10002301.g ID=Lus10002301.BGIv1.0 annot-version=v1.0 ATGGAGACAATGAGTAGCAAATTCATTCTCCTGGCTTCCATCTTTGTATTGGGAGCTTTGGCTTCTCATGCCATGGCACGATATACTCTTCCCGAAGCTG CCGTACGCCTCAGGTATGAACAGTGGATGACTCGTTATGGCCGAGTCTACGATAGTCCTAGTGAAAAGGAGGCTCGCTACCAGATCTTCAAACACAACGT AGCCTTCATCGACTCTTTTAATGCTGATGAAAACAAGTCTTACAAGCTTGGAGTCAATCAGTTTGCTGATTTGACTAACGATGAGTTCAGAGCCTCTAGA AACGGGTTCAAGGGACACATGTGTTCTCCACAACATGGACCTTTTAGGTATGACAATGTTAGCGCGGTTCCAACGACCATGGACTGGAGGAAGAAGGGAG CTGTCACTCCTATCAAAGATCAAGGTCAATGCGGAAGCTGCTGGGCATTTTCGGCTGTGGGAGCAATGGAAGGAATCCACCAGCTCCGTGCGGGGAAATT GGTGTCCCTTTCAGAACAAGAATTAGTCGACTGTGACACCAAGGGAGATGACCAAGGATGCAGCGGGGGGTTGATGGATGACGCGTTCAAGTTCATCATT CAAAACAAGGGATTGACCACCGAGACCAACTACCCTTATGACGCTGCTGATGGAACCTGCAATGCTAACAAAGAAGGCAGCAGTGCAGCCACGATTAAGG GCTACGAAGATGTGCCAGCCAACGACGAGGCCGCACTGATGAAGGCTGTAGCAAGCCAACCGATCGCAGTAGCAATTGATGCTGGTGATTCATCGTTCCA ATTCTACTCGAGTGGAGTATTCACTGGAGAATGCGGGACTGAGCTAGACCATGGAGTGACAGCAGTTGGGTATGGAGAGAGCGGTGGGATGAAATACTGG TTGGTGAAGAATTCATGGGGAGCTCAGTGGGGTGAAGCCGGATATATTCGCATGCAGAAAGATGTCAGCGCTAAAGAAGGTCTCTGCGGAATTGCAATGC AGGCTTCCTATCCTACCGCTTGA
AA sequence Show only first row Show all	>Lus10002301 pacid=23180865 polypeptide=Lus10002301 locus=Lus10002301.g ID=Lus10002301.BGIv1.0 annot-version=v1.0 METMSSKFILLASIFVLGALASHAMARYTLPEAAVRLRYEQWMTRYGRVYDSPSEKEARYQIFKHNVAFIDSFNADENKSYKLGVNQFADLTNDEFRASR NGFKGHMCSPQHGPFRYDNVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLRAGKLVSLSEQELVDCDTKGDDQGCSGGLMDDAFKFII QNKGLTTETNYPYDAADGTCNANKEGSSAATIKGYEDVPANDEAALMKAVASQPIAVAIDAGDSSFQFYSSGVFTGECGTELDHGVTAVGYGESGGMKYW LVKNSWGAQWGEAGYIRMQKDVSAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002301 [exp]	0	1
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10011114 [exp]	3.9	0.7863
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	4.4	0.8213
AT1G32920			unknown protein		Lus10001526 [exp]	6.6	0.8053
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	11.7	0.7875
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	15.5	0.7535
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	16.0	0.7736
					Lus10023556 [exp]	17.8	0.7821
AT4G30030			Eukaryotic aspartyl protease f...		Lus10007053 [exp]	18.2	0.7413
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	20.6	0.7927
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	21.1	0.7499

Compare expression of checked genes

Lus10002301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.