Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002304 [exp] 65 / 1e-13 ND / Lus10026075 [exp] 50 / 5e-08 ND / Lus10024072 [exp] 42 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10002303 pacid=23180876 polypeptide=Lus10002303 locus=Lus10002303.g ID=Lus10002303.BGIv1.0 annot-version=v1.0 ATGGCATATTTTTCTCGTAGAAACATAACGGCAGTAATCGCTGGGATGATGCTGACCGTGTTCCTCGTCGCCGGCAAGTTTCGTCGTCCTTCCGCCACCA TGGCCAGATCAGTATTTGATGGATTTGTAGCATCAACGTGTATTCCGAACACAATAACCGACAGCAATCTGGCGTCCAGTATAACGGAGGTCAACGATTA TCTGGTCCACAACACGCCTTCCCATCCCGAGTTCCTGCTTCGGACGCACGCCGTCACTGACGGCGTCACCGCCTACGGCTACGCTTATTGTTATTGGCCG GGGAAGTCTTGCACCTCTTGTCTTAATGGGCTTGTGGATTACGTTGGGACGAATTGCAAAAATGCTACGCAAGCTGACCTCAGCTCCACTTATTGTTACT TGAAATACAGTCCCAATCCGGTTTAA
AA sequence Show only first row Show all	>Lus10002303 pacid=23180876 polypeptide=Lus10002303 locus=Lus10002303.g ID=Lus10002303.BGIv1.0 annot-version=v1.0 MAYFSRRNITAVIAGMMLTVFLVAGKFRRPSATMARSVFDGFVASTCIPNTITDSNLASSITEVNDYLVHNTPSHPEFLLRTHAVTDGVTAYGYAYCYWP GKSCTSCLNGLVDYVGTNCKNATQADLSSTYCYLKYSPNPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002303 [exp]	0	1
AT1G29240			Protein of unknown function (D...		Lus10029223 [exp]	4.2	0.7585
AT1G58060			RNA helicase family protein (....		Lus10012695 [exp]	7.7	0.7090
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	12.6	0.7580
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	22.1	0.7450
AT5G48385			FRIGIDA-like protein (.1)		Lus10009979 [exp]	26.5	0.6268
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10002763 [exp]	28.2	0.7087
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10019519 [exp]	29.4	0.7416
AT2G30830			2-oxoglutarate (2OG) and Fe(II...		Lus10023600 [exp]	29.7	0.6790
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10024320 [exp]	43.6	0.6886
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	52.2	0.6676

Compare expression of checked genes

Lus10002303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.