Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 162 / 8e-47 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 160 / 2e-46 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 121 / 7e-32 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01780 111 / 8e-29 XH/XS domain-containing protein (.1) AT1G13790 110 / 6e-28 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT3G48670 105 / 2e-26 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 104 / 6e-26 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT5G59390 89 / 8e-21 XH/XS domain-containing protein (.1) AT3G29375 84 / 4e-19 XH domain-containing protein (.1.2) AT4G01180 83 / 2e-18 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026076 [exp] 299 / 9e-99 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 184 / 5e-55 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037986 [exp] 182 / 5e-54 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000951 [exp] 142 / 2e-39 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 142 / 3e-39 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 94 / 3e-22 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000948 [exp] 82 / 2e-19 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10000950 [exp] 82 / 3e-18 AT3G12550 159 / 3e-42 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10040288 [exp] 74 / 2e-15 AT1G15910 185 / 5e-53 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181000 [exp] 175 / 1e-51 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 131 / 2e-35 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 124 / 4e-33 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03469 [flax] [poplar] XH XH domain
Representative CDS sequence Show only first row Show all	>Lus10002305 pacid=23180882 polypeptide=Lus10002305 locus=Lus10002305.g ID=Lus10002305.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAAGGAAAAAGTTTCACAAATGAGCAGAAAGAGAAGGAGGAAGCCTACAATAAGATCATTCAGCTGGAAAAACAATTGGAGGTCAAGCAGA AGCTGGAAATGGAAATTCAAGAGTTGAAAGGGAAACTGAAAGTGCTGAAGCATCTGGAGGACCAAGATGATGAAGCAGTTAAGAAAGTTATGAAAGAGAT GGACGATGAGTTGGAGGAAAAAATAGACAAGCTTACTGATGAGGAAACTGTAATGAACGTTCTCATGATCAAAGACCGTCAGAGTAATGAAGAGGTTCAG GAATCACGGAAAGCAATGCTACAGGATAATGTGACAAATTCCCAGTGGTACCCGTTCAAAGTCATTGCCACTACTGATGGGGTGGAAAAGCTAATTGTTA ATGAACAAGACGAAAAGCTGGGAACTCTGAGGAAGGAGCTGAACGAGGAGATAGTGAAAGCAGTGCTTAAGGCTTTGGAGGAGCCGGATGAGTACAACCC AAGTGGGAGATACATCGTAGAAGAGCTCTGGAACTTCAAAGAAGATAGGAAGGGTGAGGAAGTGAAAGATGAAGCTCAGGGGAAGTAG
AA sequence Show only first row Show all	>Lus10002305 pacid=23180882 polypeptide=Lus10002305 locus=Lus10002305.g ID=Lus10002305.BGIv1.0 annot-version=v1.0 MKKKGKSFTNEQKEKEEAYNKIIQLEKQLEVKQKLEMEIQELKGKLKVLKHLEDQDDEAVKKVMKEMDDELEEKIDKLTDEETVMNVLMIKDRQSNEEVQ ESRKAMLQDNVTNSQWYPFKVIATTDGVEKLIVNEQDEKLGTLRKELNEEIVKAVLKALEEPDEYNPSGRYIVEELWNFKEDRKGEEVKDEAQGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	0	1
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	1.7	0.9107
AT1G07400			HSP20-like chaperones superfam...		Lus10022604 [exp]	2.0	0.9232
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	3.5	0.9102
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	3.7	0.9145
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	4.0	0.9042
AT1G60783			unknown protein		Lus10004622 [exp]	5.5	0.9080
					Lus10015620 [exp]	5.8	0.8870
AT5G62440			Protein of unknown function (D...		Lus10024968 [exp]	7.2	0.8720
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	8.7	0.8830
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10037039 [exp]	9.1	0.8541

Compare expression of checked genes

Lus10002305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.