Plant FIBer expression Database

Lus10002306 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026077
[exp]
289 / 2e-100 ND /
Lus10037393
[exp]
118 / 1e-33 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
Lus10041320
[exp]
116 / 8e-33 ND 37 / 0.003
Lus10016101
[exp]
64 / 9e-14 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G088100
[exp]
145 / 1e-44 ND /
Potri.011G127800
[exp]
45 / 9e-06 ND /
Potri.001G405600
[exp]
44 / 9e-06 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0209 Bet_v_1_like PF00407 Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence
>Lus10002306 pacid=23180871 polypeptide=Lus10002306 locus=Lus10002306.g ID=Lus10002306.BGIv1.0 annot-version=v1.0
ATGAAAGGTGAGTTGTCGAGCGAGACGGCGGTGGAAGCGCCGGCGAGCGCAGTGTGGGCGGCTTACAGAGGCAAGGAACTGGGGAGGCTAGTGACTGAGT
TGATGGGAGACACCATTGGCAGAGCCGAGGTCCTTGAAGGCGACGGCGGCGTTGGCACCATCGTCAACCTCACTTTCCCTCCTGGTATGCAAAATTCTCT
TCCTCCAATACAAAAAGACAAAACAAAATTGATGTTAATGCTCTGCCCCTTGGAAGTTTTTGCTCTGTTTTTCACTGCCCGCCCAGCATTCAACTACTCT
TATCAAGTTTATCCCGAAAGTGCAGGGACTCCTGGAGTGGGTTACATGAAGGAGATATTCACAAAGGTGGATGAGGAGAAGCGTCTCAAGGAGACTGAAA
CCATAGAGGGAGGGTTGAGAGCCTTGGGGTTCGACCTTTACCGAATTCGACTCGAAATCATCGAGACGGGGGCAGAGTCCAGCATCGTCAAATCCACGGT
GGAGTACGAGCTGGATGACTCGAAATCTGAACTGGTCTCCTACGTTTCAACTGACCTACTTGAGCTCATTGCCAAAGTCGTTGGCAACCATGTCGTCCAG
ACTTGCAAGAAGACATAG
AA sequence
>Lus10002306 pacid=23180871 polypeptide=Lus10002306 locus=Lus10002306.g ID=Lus10002306.BGIv1.0 annot-version=v1.0
MKGELSSETAVEAPASAVWAAYRGKELGRLVTELMGDTIGRAEVLEGDGGVGTIVNLTFPPGMQNSLPPIQKDKTKLMLMLCPLEVFALFFTARPAFNYS
YQVYPESAGTPGVGYMKEIFTKVDEEKRLKETETIEGGLRALGFDLYRIRLEIIETGAESSIVKSTVEYELDDSKSELVSYVSTDLLELIAKVVGNHVVQ
TCKKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10002306
[exp]
0 1
AT3G01170 Ribosomal protein L34e superfa... Lus10005234
[exp]
6.3 0.7971
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Lus10036429
[exp]
7.9 0.7546
AT5G51040 unknown protein Lus10043024
[exp]
9.6 0.7879
AT5G63450 CYP94B1 "cytochrome P450, family 94, s... Lus10014741
[exp]
9.7 0.7570
AT4G22240 Plastid-lipid associated prote... Lus10001099
[exp]
9.7 0.7971
AT3G48030 hypoxia-responsive family prot... Lus10002358
[exp]
15.9 0.7702
AT2G27710 60S acidic ribosomal protein f... Lus10019846
[exp]
17.3 0.7418
AT5G22300 AtNIT4, NIT4 nitrilase 4 (.1) Lus10005201
[exp]
19.4 0.7413
AT2G45330 TRPT, EMB1067 2' tRNA phosphotransferase, em... Lus10015875
[exp]
22.5 0.6396
AT5G17350 unknown protein Lus10017620
[exp]
25.8 0.7317

Lus10002306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.