Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31880 216 / 2e-61 unknown protein AT1G15940 189 / 6e-52 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 181 / 2e-49 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 108 / 8e-25 binding (.1.2.3) AT5G10950 84 / 3e-17 Tudor/PWWP/MBT superfamily protein (.1) AT1G77600 73 / 2e-13 ARM repeat superfamily protein (.1.2.3) AT4G02070 55 / 1e-07 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT1G05830 46 / 7e-05 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G44150 44 / 0.0001 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026078 [exp] 725 / 0 AT4G31880 228 / 1e-66 unknown protein Lus10018332 [exp] 204 / 7e-57 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 199 / 2e-55 AT4G31880 473 / 2e-152 unknown protein Lus10038777 [exp] 113 / 4e-26 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10039082 [exp] 107 / 5e-24 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10025655 [exp] 77 / 2e-14 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018180 [exp] 76 / 6e-14 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10010010 [exp] 52 / 9e-07 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10009948 [exp] 47 / 5e-06 AT1G15940 56 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046500 [exp] 255 / 8e-76 AT4G31880 267 / 1e-76 unknown protein Potri.003G181300 [exp] 241 / 1e-70 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.018G020400 [exp] 227 / 5e-65 AT4G31880 389 / 3e-120 unknown protein Potri.006G263300 [exp] 219 / 4e-62 AT4G31880 424 / 8e-133 unknown protein Potri.018G109600 [exp] 155 / 2e-40 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 148 / 6e-38 AT4G31880 167 / 8e-43 unknown protein Potri.016G005400 [exp] 112 / 6e-26 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 105 / 1e-23 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 89 / 2e-18 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.014G121701 [exp] 53 / 5e-07 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002307 pacid=23180867 polypeptide=Lus10002307 locus=Lus10002307.g ID=Lus10002307.BGIv1.0 annot-version=v1.0 ATGGACTTATTTACGAAAACTGGAGGCTACCTGGTAAAACCCACAACAGATTCTTGTCCTCATTCGAGACCAGTCAGCATACAGAAAAGCAAACCATCAG GGACAATCTCGTCTTTTCATCCGTCTGACCAGCGCCACATCAGCTCTCGCTTATGTGCTGCTTGCCTAGCCGGCCCTTTGGCCTTGGGAAGCTTATGGTA CAATTGGCCTCATCTCCCTTCTCCTCTACTCCGCCCCGGCCATTTCGGTGGAGTGGGCATCCCGCAGGTCGCTCTTGAAGGTGGACAGAGAGTTGAAAAG TTGCTCATGAGAGTGGAACAAACACCTTCAGGTAGTATGAAGGACGCGGTGATATCAGTAATGAAGGGACTAATCTCTACTGTGCTTTTAAGACACTCAA ATCCGGATGTGAGGGTTTCACTTGCCTTTTGCTATACTCAGTTCACAAGAATCACTGCACCTGATGCTCCTTACGATGATCATGGCATGAAGAAACTTTA TCAGTTAACCGTAGAAGCTTTCCAGTACCTGTCTCATTCGTCAAGTCGATATTATAGCAAGGCAGTTTCAATTCTTAGTACTTTTGCATTGATCAATTCA TGCTTGGTGATGCTGGATTTGAAGTTGGATCAACTCATTCTAGACATGTTCCAACACTTCCTGGCAATTGATAGGTCCAACTGTTCACCTGATACAATTC TGGCCATGGAAACCATAATGAGCATGGTCTTAGATGAAACGGAAGATGTATCTGTAGCTATTCTCACTCCTTTACTAGCTAGCACGGTTTCTCCAATTGC ATGGAAGCTTGGGGAAAAAGTTATGACTAATTGTGCTGCTAAACTCAAACCTCGTCTCAATGAAGCAGTGCACTCTATAGACATAGCATTGGATGAGTAC TCTTCTATTGTTGCTGAGATCTGCCAGGATAGTGAGCATCAACCTCTCCCGGATTCTCGAAATCGTTCGCAGAAGCCTACTGTTCCAAGGAAAAGAGGGA GGAAACGTAAATCATTGATGAAAATAGAGGAACTTTATCATCATCCAACGGTCCAAACAAAAACAGGCCGTAGAAGAGGCACCCCAAGAGAAAATGGAAC CAAGGCAGATACCATCTCTGCATCACCAGTTAAAGATGAAGTCTTGAGTTCTCAACTTAAGCGACTTGATATAATGTTCTGGATACAGGCTAGTAACGCC GATAACCTTGCTAAGCTACTCGTTGGGAAGATAATCAGAGTTTGGTGGCCTAAAGACAAGGAGTTTTATAAAGGAACAGTTCATAGCTACGATCCAACTT CCAAAAAGCACAAGATTCTGTATGTTGATGGAGATGTGGAGATACTGAATCTAGAGAAGGAAAGATGGGAGCTTTCTACAGATGATGAACTACAGAAGGA ACTAGGATCCATGAAGTATTCGTGTATTATCGTGTCGAAAGAGAATGTTCCGAACAGTGTAGCCGGTAGCTGCGGGGAGGAGACTGCAGCATGA
AA sequence Show only first row Show all	>Lus10002307 pacid=23180867 polypeptide=Lus10002307 locus=Lus10002307.g ID=Lus10002307.BGIv1.0 annot-version=v1.0 MDLFTKTGGYLVKPTTDSCPHSRPVSIQKSKPSGTISSFHPSDQRHISSRLCAACLAGPLALGSLWYNWPHLPSPLLRPGHFGGVGIPQVALEGGQRVEK LLMRVEQTPSGSMKDAVISVMKGLISTVLLRHSNPDVRVSLAFCYTQFTRITAPDAPYDDHGMKKLYQLTVEAFQYLSHSSSRYYSKAVSILSTFALINS CLVMLDLKLDQLILDMFQHFLAIDRSNCSPDTILAMETIMSMVLDETEDVSVAILTPLLASTVSPIAWKLGEKVMTNCAAKLKPRLNEAVHSIDIALDEY SSIVAEICQDSEHQPLPDSRNRSQKPTVPRKRGRKRKSLMKIEELYHHPTVQTKTGRRRGTPRENGTKADTISASPVKDEVLSSQLKRLDIMFWIQASNA DNLAKLLVGKIIRVWWPKDKEFYKGTVHSYDPTSKKHKILYVDGDVEILNLEKERWELSTDDELQKELGSMKYSCIIVSKENVPNSVAGSCGEETAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31880			unknown protein		Lus10002307 [exp]	0	1
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10011662 [exp]	1.0	0.9811
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	4.6	0.9514
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	5.5	0.9299
					Lus10023587 [exp]	6.3	0.9732
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	7.7	0.9732
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	8.8	0.8121
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	8.8	0.9063
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	8.9	0.9732
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	9.5	0.8811
					Lus10007927 [exp]	10.0	0.9732

Compare expression of checked genes

Lus10002307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.