Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16850 157 / 3e-43 ATTERT telomerase reverse transcriptase (.1) AT1G78955 66 / 6e-12 CAMS1 camelliol C synthase 1 (.1) AT1G78960 64 / 2e-11 ATLUP2 lupeol synthase 2 (.1) AT1G78500 62 / 1e-10 ATPEN6 Terpenoid cyclases family protein (.1) AT1G78970 62 / 2e-10 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G66960 61 / 2e-10 ATLUP5 Terpenoid cyclases family protein (.1) AT3G29255 61 / 4e-10 catalytics;intramolecular transferases (.1) AT5G48010 59 / 9e-10 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT5G36150 59 / 1e-09 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT4G15370 56 / 1e-08 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026080 [exp] 178 / 2e-50 AT5G16850 433 / 1e-135 telomerase reverse transcriptase (.1) Lus10026079 [exp] 86 / 1e-18 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10019674 [exp] 67 / 3e-12 AT1G78960 577 / 0.0 lupeol synthase 2 (.1) Lus10013546 [exp] 66 / 7e-12 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 65 / 2e-11 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10016439 [exp] 63 / 8e-11 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10019673 [exp] 61 / 2e-10 AT1G78955 395 / 6e-133 camelliol C synthase 1 (.1) Lus10033355 [exp] 56 / 2e-08 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10008544 [exp] 53 / 2e-07 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G022600 [exp] 191 / 1e-54 AT5G16850 747 / 0.0 telomerase reverse transcriptase (.1) Potri.007G002500 [exp] 74 / 1e-14 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.014G002400 [exp] 71 / 1e-13 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 71 / 2e-13 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 59 / 1e-09 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 57 / 6e-09 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.019G079200 [exp] 56 / 1e-08 AT1G78955 548 / 0.0 camelliol C synthase 1 (.1) Potri.006G079200 [exp] 56 / 2e-08 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002500 [exp] 55 / 2e-08 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 55 / 3e-08 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002308 pacid=23180879 polypeptide=Lus10002308 locus=Lus10002308.g ID=Lus10002308.BGIv1.0 annot-version=v1.0 ATGAGATTTATTGATGATTTCCTCCTTATAACAACTTCAAAGGACCATGCTGCGAGCTTTGTCTCAAAGTTGAAAAGAGGATTTGGGGACTACAACTGCT ACATGAATCAGGACAAATATTGTTTTAATTTTGATATCGGACGCGAATCAAAGCTCCCGTCAAACAGGAGCTACTGCAGCAATGATGGTACTTCATTTCT TCCATGGAGTGGGTTGCTTTTGAAGTCTTGCACTTTAGAAATTCAAGCAGACTACACAAGGTCAGATTCAAATTTGAACCTTCTTAGTTCACTTCAGGTA TCTGAAGAACCATTTGGGTTCACGTCTTACGATCAGCTGGGAGAAAGGGCCCAGTTGCCATTTGAAGAAAAAGCTGCGTTGCGTGCTTACATGAGACCAA AGTGTCACACGTTGTTCTCCGATTCGAATATCAACTCAGCACCAGTTGTCAGATTGAATGTCTTCCAGGCCTTTCTCTTATGTGCAATGAAATTCCATTT CTATATATCTGAGATGTCGTATATATGCAAACTTCCTGCAAAATGCCTTTTCAAGATGATTGAGGACAACTGGAGGTACGGGAAGTGGGGAATATGCTTC ATGTGTGGAACATGGTTTGGTCTGGGAGGGTTAGTTGCTGCAGGGATGATAACTGCGTTGGAATCCGAAACGCAGTCACTTTCCTTCTTAAAACGCAAAG ACAAGATGGAGGATGGGGAGAAAGCTACCTCTCATGCCCTACAAAGGTTCAAATTTATGTTAATTGCTTCACATGAGTACGTCTCTCTCGAAGGTCCGTC GTCCAACTTGATTCATACTTCATTTGCCATGATGGGTTTAATCCTTGGTGGACAGGTTGGTTGA
AA sequence Show only first row Show all	>Lus10002308 pacid=23180879 polypeptide=Lus10002308 locus=Lus10002308.g ID=Lus10002308.BGIv1.0 annot-version=v1.0 MRFIDDFLLITTSKDHAASFVSKLKRGFGDYNCYMNQDKYCFNFDIGRESKLPSNRSYCSNDGTSFLPWSGLLLKSCTLEIQADYTRSDSNLNLLSSLQV SEEPFGFTSYDQLGERAQLPFEEKAALRAYMRPKCHTLFSDSNINSAPVVRLNVFQAFLLCAMKFHFYISEMSYICKLPAKCLFKMIEDNWRYGKWGICF MCGTWFGLGGLVAAGMITALESETQSLSFLKRKDKMEDGEKATSHALQRFKFMLIASHEYVSLEGPSSNLIHTSFAMMGLILGGQVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16850		ATTERT	telomerase reverse transcripta...		Lus10002308 [exp]	0	1

Compare expression of checked genes

Lus10002308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.