Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80840 253 / 1e-82 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 171 / 1e-50 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G25000 155 / 4e-45 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1) AT1G68150 103 / 1e-24 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G62300 104 / 2e-24 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G22070 104 / 2e-24 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G18860 102 / 7e-24 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT4G04450 102 / 1e-23 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G01720 98 / 2e-22 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT5G15130 98 / 3e-22 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026082 [exp] 518 / 0 AT1G80840 286 / 2e-95 WRKY DNA-binding protein 40 (.1) Lus10024074 [exp] 345 / 8e-118 AT1G80840 291 / 3e-97 WRKY DNA-binding protein 40 (.1) Lus10041660 [exp] 308 / 3e-103 AT1G80840 279 / 1e-92 WRKY DNA-binding protein 40 (.1) Lus10021554 [exp] 107 / 3e-25 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10037205 [exp] 105 / 7e-25 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 105 / 9e-25 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10015546 [exp] 102 / 1e-24 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10022959 [exp] 104 / 2e-24 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10035286 [exp] 103 / 3e-24 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182200 [exp] 283 / 5e-94 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.001G044500 [exp] 281 / 3e-93 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.018G019800 [exp] 214 / 5e-67 AT1G80840 263 / 7e-87 WRKY DNA-binding protein 40 (.1) Potri.006G263600 [exp] 199 / 2e-61 AT4G31800 244 / 2e-79 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) Potri.018G019700 [exp] 131 / 6e-36 AT1G80840 137 / 9e-39 WRKY DNA-binding protein 40 (.1) Potri.014G155100 [exp] 105 / 6e-25 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.015G064100 [exp] 103 / 3e-24 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.017G079500 [exp] 103 / 3e-24 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 103 / 3e-24 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.014G111900 [exp] 102 / 8e-24 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10002309 pacid=23180891 polypeptide=Lus10002309 locus=Lus10002309.g ID=Lus10002309.BGIv1.0 annot-version=v1.0 ATGGTCGACATTTCTCTCGGTCTCAATCTCAACCCTCGGCCGCGGAAAGACGACCGATCCCCGGCGGCTGCTGCAGTTTCAGTTAAAAACGAGTGGCTGA GCTGCGGCGTACCGTCTGCTCCTTCTAATTTCATGGAATTGGGGACGAGGGTGGCTTCTCCTGTCAAGGAAGAAGTGATGACGGTGAGGGAGGCGGGAGC GTTGGTGGAGGAACTGAACAGGGTGAGCGCGGAGAACAAGAAGCTGACGGAAATGCTGACGGTGATGTGCGAGAATTACAACGCGATGAGGAATCAGTTG ATGGAATATATGGCGAGGAGTAATAATAACACTACTAACAACCCTCTGGAAGAGGCGGCGGCGACGGCGGCGGAAGTGAAGGAACAGAGTCCTTCTTCGC TTTCCTCCCGGAAGAGGAAATCCGACGCCGAGGAGAGCAGCTCCACCGACGACGACGACGAATCGCGCAAGCGGCCGCGGGAAGAAGAAGTTGTCAAGTC TAAGATTTCTAATGTTTATGTCAGGACTGAGCCATCCGATACAGGACTTATTGTGAAGGATGGATATCAATGGAGGAAATATGGACAGAAGGTCACCCGT GATAATCCTTGCCCCAGAGCTTACTTCAAATGCTCTTTTGCTCCCAGTTGCCCTGTTAAGAAGAAGGTTCAAAGAAGTGTTGAGGATCAATCAGTAGTAG TTGCAACATATGAAGGAGAACACAACCACCCATCATCAGCAGCACCAGAGGCAGCATCAACATCAATCTCCAGTGGCCGAAACCTAACCATTACTGCTGC TGCTTCCGGATCGACAACCACAGTGAAGAGTAGTAGCCCGAGCAGCACGGTCAGGAATGGATCAGGTAGTGGTGTTGCAGTGAAGAACAGTGTTCCTGTA GCTCCATCTCCGAAACAAGGAGTTGATGGTCCGGAAGTAAGGCAGTTCTTGGTGGAACAGATGGCCACTTCATTAACCAAAGATCCCAACTTCACAGCAG CTCTGGCTGCAGCCATCTCGGGTAGAATGCTTCAACAGAACCATAGTGAAAGGTGGTGA
AA sequence Show only first row Show all	>Lus10002309 pacid=23180891 polypeptide=Lus10002309 locus=Lus10002309.g ID=Lus10002309.BGIv1.0 annot-version=v1.0 MVDISLGLNLNPRPRKDDRSPAAAAVSVKNEWLSCGVPSAPSNFMELGTRVASPVKEEVMTVREAGALVEELNRVSAENKKLTEMLTVMCENYNAMRNQL MEYMARSNNNTTNNPLEEAAATAAEVKEQSPSSLSSRKRKSDAEESSSTDDDDESRKRPREEEVVKSKISNVYVRTEPSDTGLIVKDGYQWRKYGQKVTR DNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSVVVATYEGEHNHPSSAAPEAASTSISSGRNLTITAAASGSTTTVKSSSPSSTVRNGSGSGVAVKNSVPV APSPKQGVDGPEVRQFLVEQMATSLTKDPNFTAALAAAISGRMLQQNHSERW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	1.0	0.9722
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10012215 [exp]	3.2	0.9468
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	3.2	0.8949
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	3.5	0.9465
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	4.2	0.9311
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	4.5	0.9434
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	4.5	0.9312
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	4.6	0.9147
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	6.0	0.9006
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	6.3	0.9141

Compare expression of checked genes

Lus10002309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.