Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80850 297 / 2e-99 DNA glycosylase superfamily protein (.1) AT5G57970 293 / 8e-98 DNA glycosylase superfamily protein (.1.2) AT1G15970 281 / 8e-93 DNA glycosylase superfamily protein (.1) AT1G75090 250 / 5e-81 DNA glycosylase superfamily protein (.1) AT1G13635 213 / 4e-67 DNA glycosylase superfamily protein (.1.2) AT3G12710 213 / 1e-66 DNA glycosylase superfamily protein (.1) AT5G44680 205 / 2e-63 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026083 [exp] 530 / 0 AT5G57970 308 / 6e-104 DNA glycosylase superfamily protein (.1.2) Lus10019198 [exp] 190 / 3e-59 AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) Lus10036248 [exp] 194 / 7e-59 AT5G44680 383 / 4e-133 DNA glycosylase superfamily protein (.1) Lus10038388 [exp] 137 / 5e-38 AT5G57970 256 / 6e-84 DNA glycosylase superfamily protein (.1.2) Lus10019199 [exp] 132 / 3e-36 AT1G13635 222 / 2e-71 DNA glycosylase superfamily protein (.1.2) Lus10036835 [exp] 129 / 4e-35 AT1G13635 216 / 2e-69 DNA glycosylase superfamily protein (.1.2) Lus10028119 [exp] 90 / 2e-19 AT1G30130 368 / 2e-121 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182300 [exp] 332 / 7e-113 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 309 / 2e-103 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.018G106900 [exp] 306 / 2e-102 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.014G041700 [exp] 270 / 8e-89 AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1) Potri.002G133800 [exp] 260 / 6e-85 AT1G75090 333 / 7e-114 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 221 / 1e-68 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1) Potri.010G175300 [exp] 219 / 3e-68 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.001G074700 [exp] 216 / 1e-66 AT5G44680 395 / 7e-137 DNA glycosylase superfamily protein (.1) Potri.003G156500 [exp] 216 / 1e-66 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1) Potri.010G137300 [exp] 213 / 1e-66 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Lus10002310 pacid=23180888 polypeptide=Lus10002310 locus=Lus10002310.g ID=Lus10002310.BGIv1.0 annot-version=v1.0 ATGGATCCGGAGAACAAGGGAAGGAATCGGGTAATGTCCGGCGGCCCGGCGAGATTGCGGTCGTTGAAAATCGCGGAGCCGGAGAATAAGGGGCTGCAGC AAAAGCCAGCAAGGAAGCAACAAGTGGCGGCGGTTCTGCGGCAGAAGTCCATGAATGCTTCGTGCTCCTCGGATGCGTCGTCCGATTCCACGACCAGCAG CAGCCGGGCATCTTCCTCCTTCTCGTCGGCGACGACGGGTGGAATGCTGGGGCGGAGCAACGGAACCGTCGCGGTGGTGGTTAAGAGGAGGCAGCAATGT AGGTTGAGAATTGACAAAGACGAGGCAGGGAGACGTCGAAATGCGGCGGCAGAGGAGAGTGGCGGCGATGTTCAGTTAGTTGGTGAAGTGGAATGCGCTT CAAATCAGAGTACGAAAAGGTGCCCTTGGGTTACTCCGACAACTGAACCATCGTACGCAGCATTTCATGATGAAGAATGGGGAGTGCCAGTCCATGATGA CAGGAAACTTTTCGAACTGCTAAGTTTTTCTGGAGCCCTGGCAGAACTAGCATGGCCTGCCATTCTTGACAAACGACAGATGTTTAGAGAAATCTTTCTA GATTTTGACCCAATGGCTGTGTCGAAGCTGAACGAGAAGAAGTTTGTCATGGCTGGAAGCCCAGCTCGCTCTCTTCTCTCGGAACAGAAGCTACGCTCAA TCCTCGAAAATGCACGCCAAATTTGCAAGATTAGGGCGGAGTTCGGATCATTCGACAAGTACATCTGGAATTTCATGAACCAAAAGGCTACCACAAACTC ATTCAGGTACTCCCGCCAAGTTCCGGTCAAGACATCAAAAGCAGAAGTGATAAGCAAAGATCTCGTGAGGAGAGGGTTCCGATGTATTGGACCGACGGTT ATATACTCATTCATGCAAGTAGCCGGTTTAACGAACGACCATCTCATCAGCTGCTACAGACACCATGAATACATCGTAGCAGAGGCCAAGGAAACTATTG CAGACATTCATATTCTCAAGTCCAAGAAAGAAGCCGAACAACCATTTGCAGAATAG
AA sequence Show only first row Show all	>Lus10002310 pacid=23180888 polypeptide=Lus10002310 locus=Lus10002310.g ID=Lus10002310.BGIv1.0 annot-version=v1.0 MDPENKGRNRVMSGGPARLRSLKIAEPENKGLQQKPARKQQVAAVLRQKSMNASCSSDASSDSTTSSSRASSSFSSATTGGMLGRSNGTVAVVVKRRQQC RLRIDKDEAGRRRNAAAEESGGDVQLVGEVECASNQSTKRCPWVTPTTEPSYAAFHDEEWGVPVHDDRKLFELLSFSGALAELAWPAILDKRQMFREIFL DFDPMAVSKLNEKKFVMAGSPARSLLSEQKLRSILENARQICKIRAEFGSFDKYIWNFMNQKATTNSFRYSRQVPVKTSKAEVISKDLVRRGFRCIGPTV IYSFMQVAGLTNDHLISCYRHHEYIVAEAKETIADIHILKSKKEAEQPFAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80850			DNA glycosylase superfamily pr...		Lus10002310 [exp]	0	1
AT5G57970			DNA glycosylase superfamily pr...		Lus10026083 [exp]	1.0	0.9047
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10030378 [exp]	7.1	0.9043
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10014784 [exp]	13.0	0.8774
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	21.5	0.8410
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	22.1	0.8061
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	23.8	0.8466
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	24.0	0.8185
					Lus10024189 [exp]	25.6	0.8452
AT1G11120			unknown protein		Lus10039796 [exp]	31.9	0.8699
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003565 [exp]	40.5	0.7599

Compare expression of checked genes

Lus10002310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.