Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14630 317 / 9e-104 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14610 315 / 4e-103 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14640 315 / 6e-103 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 315 / 7e-103 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14690 313 / 3e-102 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14660 310 / 3e-101 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT2G26710 309 / 1e-100 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14650 297 / 4e-96 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT2G46960 295 / 3e-95 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14620 289 / 6e-93 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026085 [exp] 783 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10026084 [exp] 761 / 0 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017775 [exp] 705 / 0 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10028119 [exp] 602 / 0 AT1G30130 368 / 2e-121 unknown protein Lus10019184 [exp] 495 / 2e-173 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036818 [exp] 429 / 1e-147 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 428 / 4e-147 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10002108 [exp] 421 / 1e-144 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036822 [exp] 424 / 3e-144 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 497 / 4e-174 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 480 / 1e-167 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 474 / 3e-165 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 470 / 9e-164 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 462 / 8e-161 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 439 / 9e-152 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 328 / 4e-109 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G098800 [exp] 325 / 5e-107 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.006G154500 [exp] 321 / 3e-105 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G101401 [exp] 320 / 6e-105 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002311 pacid=23180892 polypeptide=Lus10002311 locus=Lus10002311.g ID=Lus10002311.BGIv1.0 annot-version=v1.0 ATGCCGGGTCCTTCTCATGATGTTTATCCCAGGTTGCAGCCTCACTTGTCCGCCTGGTCCAAGACATACGGCCCGAATTTCGTGTTCTGGATCGGCAATC GCCCTTTTGTGGCTGTGTCGGAGCCGGAGATGGTGAAGCAAGTCGCCAAAGATCGAGACAAAGCTTATGGGAAAATACCTCCGAGAGGTATAATAAAGCA GTTACTCGGAGATGGACTGGTCACTTCGGAGGGCGAAAAGTGGACCAAGTTGAGAAAGCTTGCTAATTTCGCCTTCTTCGGTGAGAGCTTAAAGAATATG ATTCCGGCGATGATTGCTAGCACAGATATGATGCTAGAGAGGACTGCTTTTGGGAGTAGCTACTTGGAAGGACAGCAGCTCTTTTACAAGTTGAGTAAGC TTACTGAGCTCGCCGCTGCGAGTTTCTTCAAAATTCGGATCCCTGGAATCAGCAAGATTTACAAAACCAGTGCTGATATTGAATCAAAGAAGCTTGAGGA AGGAATAAGAGCGTCTATATTGGGAATGCTTCGAAAAAGAGAAGAGATGATCGCAGCGGGAGAGGCAGATGGCTTTGGGGACGATTTCCTCGGATCACTA CTGAAAGCTAATCACGAAAGTGATGAATCGAAGCGAATTACGGTGGATGACGTGGTGGATGAGTGCAAGACGTTCTATCTTGCTGGACAAGAAACAACCA ACACTCCCTTGGCATGGGTTATCTTACTTATATCTATCCATACAGATTGGCAGGAGAAAGCAAGAGCAGAAGTTCTGAGCCAATTCGGGAGCCGAGCTCC TAACGCGGATGGGATTGCAAGGCTCAAGGTTCTGAACATGATTATCAACGAGACACTGCGGTTATATCCTCCAGCGAGCGGGATTACTCTAGAAGTTGTG AAAGATGTTCAACTGGGGAAGCGGGCTCTCCCTAAAACAACACACATCATCATCGATGCAATATCGCCTCATCAAGACCCTAAAATTTGGGGAGAAGACG CGCATGAGTTCAATCCGGAAAGGTTTTCTGAAGGAGTTGCCAAAGCAACGAACAACAATCCATCCGCGTTTCTTCCATTTGGGATAGGGGTGAGAGTTTG TGAGGGATCAAGCTTTTCAGCAAATGAAGCGAAGATCGCACTTTCGATGATCCTTCAGCGTTATATGTTCACTCTTTCTCCGACTTACATTCACTCTCCG ACTCAAATTGTAACGACCCACCCACAGCATGGAGTTCAGGTCATCCTCCATGCCCTCCAGTAG
AA sequence Show only first row Show all	>Lus10002311 pacid=23180892 polypeptide=Lus10002311 locus=Lus10002311.g ID=Lus10002311.BGIv1.0 annot-version=v1.0 MPGPSHDVYPRLQPHLSAWSKTYGPNFVFWIGNRPFVAVSEPEMVKQVAKDRDKAYGKIPPRGIIKQLLGDGLVTSEGEKWTKLRKLANFAFFGESLKNM IPAMIASTDMMLERTAFGSSYLEGQQLFYKLSKLTELAAASFFKIRIPGISKIYKTSADIESKKLEEGIRASILGMLRKREEMIAAGEADGFGDDFLGSL LKANHESDESKRITVDDVVDECKTFYLAGQETTNTPLAWVILLISIHTDWQEKARAEVLSQFGSRAPNADGIARLKVLNMIINETLRLYPPASGITLEVV KDVQLGKRALPKTTHIIIDAISPHQDPKIWGEDAHEFNPERFSEGVAKATNNNPSAFLPFGIGVRVCEGSSFSANEAKIALSMILQRYMFTLSPTYIHSP TQIVTTHPQHGVQVILHALQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	0	1
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	2.4	0.8698
AT1G67910			unknown protein		Lus10023630 [exp]	7.1	0.8715
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	8.1	0.8440
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	9.2	0.8511
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	9.3	0.8353
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10008089 [exp]	10.1	0.8195
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10040238 [exp]	11.2	0.8638
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	12.2	0.8595
AT4G27610			unknown protein		Lus10043458 [exp]	13.7	0.8536
AT4G38225			unknown protein		Lus10026560 [exp]	14.2	0.8661

Compare expression of checked genes

Lus10002311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.