Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15980 545 / 0 PnsB1, NDH48, NDF1 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026086 [exp] 704 / 0 AT1G15980 642 / 0.0 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044300 [exp] 542 / 0 AT1G15980 639 / 0.0 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002312 pacid=23180866 polypeptide=Lus10002312 locus=Lus10002312.g ID=Lus10002312.BGIv1.0 annot-version=v1.0 ATGGCATCAACTTGCCTCCTTCCCAAACCCATCACTCACCTTTTCCTGAAAACCCCACCATCACATTCCTCTCCTTCCTCAGAATTCACCACCAACAACC ACCAATCATGCACTTCACGTAGGCCAAATCAAAGGCAAACAACCAGAGTGAATCTGAAGAAGAAGAACCCCTGGCTCGACCCGTTTGACGATGGACCCGA CCCGGATATGGAGTACGGGTCGCTCTTCTCTGATGGCAAGCAAGATGAAGACGACAGGCCGCCTGAGAACCCAGACAATCCTTATGGATTCCTCAAGTTC CCGGCTGGATACAGCGTCGAAATCGCCTCTATAGGGTTGAAAGTCAGAGGTGATGTGAGGGTGTGTTGCTGTGTCGTCGCTGGTGGTGTCTATGAGAACT TGCTCTTCTTCCCCACCATTCAGCTCCTCAAGGACAGGTACCCTGGGGTTCAGATTGATGTAATAACATCAGACAGAGGGAAGCAGGCTTATGAGCTGAA TAAGAATGTGAGGTGGGCAAATGTCTGGGACATTGATGATGATTTCCCTTACCCTGCTGAGTATATGGATATGCTTGGAATTATCAGGGGGAGGTACTAC GACATGATACTATCAACAAAAATAGCAGGGCTAGGCCACGCCACATTCCTCTTTTTGTCCACTGCTAGAGACAGAGTCAGCTACGTGTATCCAAATGTAA ATGCAGCAGGAGCAGGTCTAATGCTATCGGAGACCTTCACTCCGGACACTCTGAACCTCTCCGAGAAAGGATACAACATGTACGAGGAGATGCTCGACTG GTTGGGGAAGCCATTTCGGAGCGTTCCCAGGACGCCAGTTCCTCCTCTGAGAGTGTCCATTTCTAAGAAGGTTAAGGCGGCTGTGGAGGCCAAATATAAG GCTGCTGGTGCTGAGATGGGCAAGTATATAGTGATTCATGGGATTGAATCGGATTCCAAGGCGTCCATGCAGTCCAGAGGAGACACGGATAGCTTGCTGT CGATTGATCAATGGGCTGACATTGCCGACTCTATAAGTGAATTGAAGCCAGTTTTCGTGATTCCACATGAGAAAGAAAGGGAAAATATAGAAGAAATTTT GGAGGAACCCAGTATAGTCTTCATCACCACTCCCGGCCAGCTGGCTGCTCTGATTAACGACTCTGCTGGAGTGATAGCTACAAACACAGCAGCAATCCAA CTCGCAAATGCCCGCGGGAAACCCAGCATTGCCCTGTTTTCCTCTGAGGAGAAGGCGAGACTGTTTGTTCCAAATGCAGAGGAGAAAAGATGCACTATTG TAGCATCGAAGACCGGCATACTCAAAGACATAGACGTTGGAGCTGTCATAGTTGAAGTCAAGAAAGCTTTCGAACGCTCCTTTGCTCTGGTCTAG
AA sequence Show only first row Show all	>Lus10002312 pacid=23180866 polypeptide=Lus10002312 locus=Lus10002312.g ID=Lus10002312.BGIv1.0 annot-version=v1.0 MASTCLLPKPITHLFLKTPPSHSSPSSEFTTNNHQSCTSRRPNQRQTTRVNLKKKNPWLDPFDDGPDPDMEYGSLFSDGKQDEDDRPPENPDNPYGFLKF PAGYSVEIASIGLKVRGDVRVCCCVVAGGVYENLLFFPTIQLLKDRYPGVQIDVITSDRGKQAYELNKNVRWANVWDIDDDFPYPAEYMDMLGIIRGRYY DMILSTKIAGLGHATFLFLSTARDRVSYVYPNVNAAGAGLMLSETFTPDTLNLSEKGYNMYEEMLDWLGKPFRSVPRTPVPPLRVSISKKVKAAVEAKYK AAGAEMGKYIVIHGIESDSKASMQSRGDTDSLLSIDQWADIADSISELKPVFVIPHEKERENIEEILEEPSIVFITTPGQLAALINDSAGVIATNTAAIQ LANARGKPSIALFSSEEKARLFVPNAEEKRCTIVASKTGILKDIDVGAVIVEVKKAFERSFALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10002312 [exp]	0	1
AT1G51100			unknown protein		Lus10011316 [exp]	2.2	0.9358
AT3G50685			unknown protein		Lus10026029 [exp]	2.4	0.9298
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10027649 [exp]	3.2	0.9035
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	6.7	0.9159
AT5G19740			Peptidase M28 family protein (...		Lus10043036 [exp]	7.5	0.8618
AT2G01870			unknown protein		Lus10030135 [exp]	11.7	0.8961
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	13.9	0.9067
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	16.7	0.8959
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019083 [exp]	20.0	0.8743
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	21.1	0.8312

Compare expression of checked genes

Lus10002312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.