Plant FIBer expression Database

Lus10002313 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026088
[exp]
77 / 6e-17 AT2G23060 369 / 1e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Lus10009076
[exp]
47 / 3e-07 ND /
Lus10021739
[exp]
46 / 1e-06 ND /
Lus10043044
[exp]
46 / 6e-06 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1)
Lus10008375
[exp]
42 / 4e-05 ND /
Lus10003431
[exp]
42 / 5e-05 ND /
Lus10037828
[exp]
40 / 0.0001 ND /
Lus10032744
[exp]
40 / 0.0002 ND /
Lus10042500
[exp]
39 / 0.0002 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10002313 pacid=23180889 polypeptide=Lus10002313 locus=Lus10002313.g ID=Lus10002313.BGIv1.0 annot-version=v1.0
ATGGCGACCCCATCAGCTGCTGCCGCAACCACCGTGGAGCAACAAGTCAAGGGTCTCTCCCTCGACGACATTGAAGAAGAGGAGATGCATCTTGCTCAAT
TGGTGTCGACTCCCCGACCATGGGAGTATGAACTCTGCGCCGTCGGCTCCTTCCACACGAAGAGGAAGATCAACCTCAAAGATATGTCCGAGAAACGGTC
CGGACTTTGGAAACCAGGACGCAGAGTGAAAATCGATGACCTAAGGCCCTTAAATTCCACATATAAAAAGCTGGTTAAGTGCCCCCAAAATCTTGCTGAC
AGTTACATCTCTACCCATAAGCACGGTTTACTGATGAGTACGTCGACGAGAGTAGCGGCGGTGGATGAGTTTCCGGCCGACGTCGAAGAGAGGAAGAGGT
CGGCGGCGGAACGGGTGGTGGTGAGAGAGTTCGACGGCGAGAGAGACACGGCGGAGGGGGAGGAGGTGGAGCGGCGGGGCGGAGGTTGGGGAACTTGCGC
CTGCCGACAGAGCTGA
AA sequence
>Lus10002313 pacid=23180889 polypeptide=Lus10002313 locus=Lus10002313.g ID=Lus10002313.BGIv1.0 annot-version=v1.0
MATPSAAAATTVEQQVKGLSLDDIEEEEMHLAQLVSTPRPWEYELCAVGSFHTKRKINLKDMSEKRSGLWKPGRRVKIDDLRPLNSTYKKLVKCPQNLAD
SYISTHKHGLLMSTSTRVAAVDEFPADVEERKRSAAERVVVREFDGERDTAEGEEVERRGGGWGTCACRQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10002313
[exp]
0 1
AT5G67360 ARA12 Subtilase family protein (.1) Lus10027891
[exp]
1.4 1.0000
AT1G26480 GF14IOTA, GRF12 general regulatory factor 12 (... Lus10036896
[exp]
2.0 1.0000
AT5G56790 Protein kinase superfamily pro... Lus10000773
[exp]
4.0 1.0000
AT1G69530 ATHEXPALPHA1.2,... EXPANSIN 1, expansin A1 (.1.2.... Lus10003438
[exp]
5.0 1.0000
AT5G49900 Beta-glucosidase, GBA2 type fa... Lus10023340
[exp]
5.5 1.0000
AT3G25810 Terpenoid cyclases/Protein pre... Lus10010970
[exp]
6.3 1.0000
Lus10024762
[exp]
6.5 1.0000
AT1G35720 ATOXY5, ANNAT1 annexin 1 (.1) Lus10036470
[exp]
6.5 1.0000
Lus10032968
[exp]
6.9 0.9998
AT5G05340 Peroxidase superfamily protein... Lus10009090
[exp]
6.9 1.0000

Lus10002313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.