Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37580 335 / 3e-113 UNS2, COP3, HLS1 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G23060 330 / 4e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT5G67430 283 / 4e-93 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G30090 234 / 6e-74 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026088 [exp] 655 / 0 AT2G23060 369 / 1e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10002468 [exp] 318 / 1e-106 AT2G23060 589 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10025191 [exp] 317 / 1e-105 AT2G23060 584 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10016904 [exp] 182 / 5e-54 AT4G37580 181 / 3e-53 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044100 [exp] 452 / 4e-159 AT4G37580 372 / 4e-127 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.003G182500 [exp] 450 / 1e-158 AT2G23060 368 / 3e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.007G054200 [exp] 337 / 6e-114 AT2G23060 597 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G146100 [exp] 328 / 2e-110 AT2G23060 609 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G279400 [exp] 272 / 6e-89 AT2G30090 374 / 2e-128 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.009G074200 [exp] 267 / 4e-87 AT2G30090 383 / 6e-132 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G144700 [exp] 234 / 8e-74 AT2G23060 224 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10002314 pacid=23180886 polypeptide=Lus10002314 locus=Lus10002314.g ID=Lus10002314.BGIv1.0 annot-version=v1.0 ATGGGCGACCCTATTTGTCGGGTTCGCTACTTCCCTTTGCATGTCATGATGGTGGCTGAGTTTGGGGAAGGAAGGGAAATAGTAGGAGTGATAAGAGCAT GTATTAAAACGGTATCGAGAGGGAACTCATCGAATATGAATGATTATATCAAATTGGTTTATATTCTCGGACTCCGAGTTTCTCCTATTCACAGGAGACT CGGCATAGGCGCAAAGCTGGTGTCCAAAGTAGAAGAATGGAGCAGGCAAAACGGCGCCGTATACGCATACATGGCAACAGATTGCACCAACCAACCTTCC ATCAATCTCTTCACCGGCAAATGCTCCTACAAAAAATTCCGTACTCCGGCAATGCTAGTCCAGCCAGTCCACGCGCACCGCAAGTCCATTCCATCCTCCA CATCAATCATACAACTAACCCCACGCGCCGCCTCTCTAATCTACCGCAAAGTCTTCGAAACCGCGGAATTCGTCCCGAACGACATCGACTCAATCCTCTC CAGCAAGCTAAATCTCGGGACATTCATCGCCGTGTCGGAAAAACACGCGGACAGTACTAAAATTAACAACAACACTCTACCGGCGAGCTTTGCAATCATG AGCATTTGGAACGCGAAGGAAGTGTTTCAAATGCAAGTGAAGAGCGCGTCGAGGGTGAGTCGGGCGTGTTGTGCCGGGTCGTGGCTGATGGACACGTGGC TGCCGTGTCTGAAGCTGCCGTCGATCAACCCAAAAGTGTTCGGGGGGTTTGGAGTCCGGGTGATGTACGGATTGCACATGGAAGGTAAAGGTGCGGGCAG GCTCATGAGAGCTTTGTGTGGGTACGCACACAATATGGCGATGAGTGACAAAGGGTGCGGCGGATTGGTCGTCGAGGTGGGCCCGAGGGACCCGGTGAGA AAGGTGGTCCCACATTGGAGGAGGTTTTCTTGGGAGCAAGATATTTGGTGCATAAAAAAACTTGATCAAGAAGGAGAAGTGGGCGATCGTGATCCGTCAG ATTGGGTGACATCTTCCCGGTCGACGCCGGTGATTTTCGTTGACCCTAGAGATTTCTGA
AA sequence Show only first row Show all	>Lus10002314 pacid=23180886 polypeptide=Lus10002314 locus=Lus10002314.g ID=Lus10002314.BGIv1.0 annot-version=v1.0 MGDPICRVRYFPLHVMMVAEFGEGREIVGVIRACIKTVSRGNSSNMNDYIKLVYILGLRVSPIHRRLGIGAKLVSKVEEWSRQNGAVYAYMATDCTNQPS INLFTGKCSYKKFRTPAMLVQPVHAHRKSIPSSTSIIQLTPRAASLIYRKVFETAEFVPNDIDSILSSKLNLGTFIAVSEKHADSTKINNNTLPASFAIM SIWNAKEVFQMQVKSASRVSRACCAGSWLMDTWLPCLKLPSINPKVFGGFGVRVMYGLHMEGKGAGRLMRALCGYAHNMAMSDKGCGGLVVEVGPRDPVR KVVPHWRRFSWEQDIWCIKKLDQEGEVGDRDPSDWVTSSRSTPVIFVDPRDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	0	1
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	2.0	0.9022
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	4.2	0.8966
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	4.9	0.9165
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10039277 [exp]	13.3	0.8340
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10004707 [exp]	13.4	0.8376
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	16.7	0.8063
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003265 [exp]	26.9	0.7964
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	28.8	0.8442
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10026088 [exp]	29.2	0.8423
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	40.9	0.7934

Compare expression of checked genes

Lus10002314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.