Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73060 476 / 6e-168 LPA3 Low PSII Accumulation 3 (.1) AT5G48790 44 / 0.0002 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026089 [exp] 554 / 0 AT1G73060 472 / 1e-167 Low PSII Accumulation 3 (.1) Lus10007599 [exp] 43 / 0.0006 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044000 [exp] 533 / 0 AT1G73060 529 / 0.0 Low PSII Accumulation 3 (.1) Potri.003G182801 [exp] 68 / 2e-14 AT1G73060 70 / 4e-16 Low PSII Accumulation 3 (.1) Potri.003G100300 [exp] 42 / 0.0004 AT5G48790 431 / 4e-153 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10002315 pacid=23180864 polypeptide=Lus10002315 locus=Lus10002315.g ID=Lus10002315.BGIv1.0 annot-version=v1.0 ATGGCGCTTCCTCAAATGGCTTCCTCATCGAACTCCGTCTCTTCAAGTCATTCCGGCCTCTCGATCTTCCCCTCACCTCTCCGCCACTCAACTCCTCTCT CACTTGCGCCGTCGACATCTGCCGCTCCGTGGCGCACGCGAAGCGGTGGTGGCATTGGAGCACTCCTCCGGCACTCTAACAATCGGCAATGGCGGAAATC AATTAGAGCTCAAGCTGCTGTCACTCAGAGTAGCGGTAACGATCCGAAGAGCGGCGTGGCCGTCTACAAGCCTAAGTCCTACGAGGTTCTCGCCGCTGAT GCCGCCAATTCTCTGGCCTTCGCAATTCAGGACGGCAAGCAAAGAATGGAAATCGATTTTCCGCCCTTACCTAGCGACATTTCTTCATACAAGGGGTCTT CAGATGAGTTCATCGACGCCAACATTCAACTAGCATTGGCTGTTATCAGGAACCTGAAAGAGAGAGTCGAAACAAGAGCCTGCATTGTGTTCCCTGATAC GCCAGAAAAACGCAGGGCATCTAAGCGTTTCGGAACCGCCATTGACTCGGCAAAAACACTTTCACTCGTTGGACCTCTTTCACTCGTTGGACTATTCATT TTATGCAGCACATATTATTGTGTCGCTAAATCTCCTTTAATCTGCCCTGGTGATACTTTTTGCTTTGTCGAAGGAATAACTGTTGGTTCACTTGATGATC TCCCTAGTGGTCCTGTCGACAATTTCTTCAAGTCTATCAGGAGCACCTTAGATTTCGATTTTGAAGAAGATAATGAAGGTCGTTGGCAGTCAGATGAGGC ACCATCACTTTATCTGTTTCTTAACTGCAGCACACGTGAATTATCTGGCATAGAGAAGTATGTGGAGAAATTTGCTTCAGCAACCCCAACAGTTCTGTTC AATCTTGAACTTGATACACTACGGGCTGACTTGGGTCTCTTTGGGTTTCCCACAAAAGATTTGCATTATCGGTTTCTGTCTCAATATATCCCAGTTTTCT ATATTCGAATTAGAGATTACTCAAAGACAGTAGCAATAGCACCTTACATTGTCAACTACAGTGGCGCTTTATTTCGTCAATATCCAGGACCTTGGCAGGT TATGCTTAAACAGGCAGATGGTTCTTATGCTTGTGTAGCAGAGAGTAGTACACGCTTCACACTCGGCGAGACAAAAGAAGAACTGTTGAGGGTTCTCGGG CTTCAGGAGGAGCAGGGTAGCAATTTGCAGTTTCTTCGTAGAGGTTACAGGGCTGCTACTTGGTGGGAAGAAGACGTTGACTTGGAAGAATCTCAAGCAT GGCGTAGCTGA
AA sequence Show only first row Show all	>Lus10002315 pacid=23180864 polypeptide=Lus10002315 locus=Lus10002315.g ID=Lus10002315.BGIv1.0 annot-version=v1.0 MALPQMASSSNSVSSSHSGLSIFPSPLRHSTPLSLAPSTSAAPWRTRSGGGIGALLRHSNNRQWRKSIRAQAAVTQSSGNDPKSGVAVYKPKSYEVLAAD AANSLAFAIQDGKQRMEIDFPPLPSDISSYKGSSDEFIDANIQLALAVIRNLKERVETRACIVFPDTPEKRRASKRFGTAIDSAKTLSLVGPLSLVGLFI LCSTYYCVAKSPLICPGDTFCFVEGITVGSLDDLPSGPVDNFFKSIRSTLDFDFEEDNEGRWQSDEAPSLYLFLNCSTRELSGIEKYVEKFASATPTVLF NLELDTLRADLGLFGFPTKDLHYRFLSQYIPVFYIRIRDYSKTVAIAPYIVNYSGALFRQYPGPWQVMLKQADGSYACVAESSTRFTLGETKEELLRVLG LQEEQGSNLQFLRRGYRAATWWEEDVDLEESQAWRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	0	1
AT3G61870			unknown protein		Lus10012617 [exp]	1.0	0.9729
					Lus10005720 [exp]	4.5	0.9469
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	4.7	0.9339
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	5.3	0.9429
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	5.7	0.9433
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025768 [exp]	7.3	0.9229
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	8.7	0.9187
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	8.9	0.9340
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	9.2	0.9400
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	10.2	0.9346

Compare expression of checked genes

Lus10002315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.