Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2) AT5G57820 44 / 9e-05 zinc ion binding (.1) AT5G18260 44 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037162 [exp] 59 / 2e-08 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036764 [exp] 56 / 6e-08 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10035820 [exp] 54 / 3e-07 AT5G18260 47 / 3e-06 RING/U-box superfamily protein (.1) Lus10020256 [exp] 49 / 1e-05 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10002639 [exp] 48 / 3e-05 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10007703 [exp] 45 / 4e-05 AT5G57820 47 / 8e-07 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042000 [exp] 109 / 2e-24 AT5G57820 47 / 9e-06 zinc ion binding (.1) Potri.006G180600 [exp] 55 / 1e-07 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 49 / 1e-05 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 47 / 4e-05 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002316 pacid=23180881 polypeptide=Lus10002316 locus=Lus10002316.g ID=Lus10002316.BGIv1.0 annot-version=v1.0 ATGTTGCTGAACCAAAACATACTTGTGCTGATGTGCATCTGTGTCAATCTAAACGGAGTTGTTCTTTGCTGTAGATATAAACCGGGTCATGCAATGGCGA GTGAGAAAGTGAAACAAGAACAAGATGTGGAATTTCCTAGTTCTGCTCCCGATCTAAATGAAGAAATTGGATCCATTGATCTTAATCATTCAACCAGCTT TACTGGTACGCCCTGGAATACGTTGCCTTTATTTCCTAATGACCCTGCATCAGATACACTGCCAATGCGTCAAAATCATGTTGAAGGGACTCAGACACCT TTCTTCAGAATGATCTCTCCGTATCAACAGACGGATGGTAGGCATTTGATGGCTCAAGATCCTCATCAGGAGGTGCCGCTGACTGCCACACCTACAGCTG CTCAGTTTTCTCTTACTTCATTGCCTTCAAATGGGAACCGGTTCTATCAGAACCATTACCTACGGGATACCATGATTCCGGAGGACAGGGGAATGAATTT TATACAGAGCAATGATCTTGAGAAGGCCCAAGTTTATAGAAATCTGGCCACAGCAGGCCTCATGGATGGAGGTTCTCTAGTACACAATGTCAGAAATGAA TCAAATTCGGACATAGAGACTATGCTGAGATTAAGCTCTTTCAAAGAAAATCAGCCTGAGGTACACTCTGTGAACGTTCCAACTCATGGATTTGGAGCAG CATATAATGTGGAGACTAGACCTAACTATGGCATTTCCAGTATAGGCAGCACTGGGGTGGACTCGATGGATGTTGATAAAAGCTTTTTCAGTCCTTCAGA TACGACTACTGGTTTCACTGACTCGGGAAATAATGCGGAGATCTTCAACCGTTCACAGCCAAACCGAGATGGTGTCACATTTTCAAGGGGATTATCCAAT CGTCAGAATGAAGTTCCTTTTACCCCTATAAATGATGAACTTTCCTGGCTAATACAGGATGTCAGTGGGTTTCCTCAACCTATTGAAAATAGAATGCTTG GAGCACAAAACATAGGTGCATTTCCTGCCAATTTACAGAATGTAGGCCCTGCCCGATTGTCACAAAACAGTGATGCTGGCACAAGTTCAGCGTTCGTACA TGCTCAACATGCTTATCAGATTCCAAGCAATAGGAACTTGGATATCCAAGGAAATCGAGCTGCATCATCAGTAGCTAGTTATGCTACCTCTGGCCTTTGG GGATCTTCAGCTGAACTTTCAGGACTGCAAAACAATAACCATGTTAGTTTTCCTGGTTACAGGCAGTATGGGTTGGCTACATTTCCACCATCAAATTCAA TATTGCAGGGAGGCATTCAACCTGCTTCCTTCCAAATGACAAATCCTTTCTTCGGGAATCATAATAACTTCTCTTTGGGGTCTTATCCCGTCTCTCCTCC TATGGGGGATACAAGAAGTATCAACATGCAGGATTTCACAGATAATGTTGGATTATCTCAAGCCATTGCTCCAGTACAGCCATCAACAGATGTACCGGCA ACAACTCACAGAGCCGAAAATGTTAAATCTCGTAAGAGGGGCATGCCCAAACCTCTATCTGAGCGCAAACGGACGAGAACAGTTAAAAATTCTGGTCAAA CATCTCAATCTCCGGAGGCGCCGCAGAGTTCTACTTCAATCTCATCTCCTGGTTTGAATGCCACCCCATTGAGCACAATTCCCAATATGTCAACAACTTT TTTGCAGCAGACACCGTTCGTTCCAAACGCCCCCTTGTATCATCATCCTCAACCTTCAATGGTTGCATTACGCCAACCTCTACCTCCAACTGCCAACTTC CTTCCACCACAAGCTCGAACTATAATCAGACGTCCACCTAGAGTTCCAACAGTAGCGTTACCTTCTCGACCCCGACCTCCAATTGCTGCTGCTTCACGGC CACCTCGAGCTGCACTCGGAATAGCTAATCATATCACCCAGTATATCAAATGGGAAGGTCTTAGTGGAGCGCCGAAACCAAGTGGAATGCAGTGCATGAT ATGCAAGAGGGATCTTGCATTTACACCAGAAGGACCCATCTCTGTGGAGAGGAACCTGCCGCCGGTATCGGTGCTGGCGTGCCACCACCATTTCCATAGT TTCTGCTTGGAACGAATAACTCCAAAGGAACAAGCTGGGGAGCCTCCATGCATACCCTGTGCGATGGGTGGTGTGAAGTAG
AA sequence Show only first row Show all	>Lus10002316 pacid=23180881 polypeptide=Lus10002316 locus=Lus10002316.g ID=Lus10002316.BGIv1.0 annot-version=v1.0 MLLNQNILVLMCICVNLNGVVLCCRYKPGHAMASEKVKQEQDVEFPSSAPDLNEEIGSIDLNHSTSFTGTPWNTLPLFPNDPASDTLPMRQNHVEGTQTP FFRMISPYQQTDGRHLMAQDPHQEVPLTATPTAAQFSLTSLPSNGNRFYQNHYLRDTMIPEDRGMNFIQSNDLEKAQVYRNLATAGLMDGGSLVHNVRNE SNSDIETMLRLSSFKENQPEVHSVNVPTHGFGAAYNVETRPNYGISSIGSTGVDSMDVDKSFFSPSDTTTGFTDSGNNAEIFNRSQPNRDGVTFSRGLSN RQNEVPFTPINDELSWLIQDVSGFPQPIENRMLGAQNIGAFPANLQNVGPARLSQNSDAGTSSAFVHAQHAYQIPSNRNLDIQGNRAASSVASYATSGLW GSSAELSGLQNNNHVSFPGYRQYGLATFPPSNSILQGGIQPASFQMTNPFFGNHNNFSLGSYPVSPPMGDTRSINMQDFTDNVGLSQAIAPVQPSTDVPA TTHRAENVKSRKRGMPKPLSERKRTRTVKNSGQTSQSPEAPQSSTSISSPGLNATPLSTIPNMSTTFLQQTPFVPNAPLYHHPQPSMVALRQPLPPTANF LPPQARTIIRRPPRVPTVALPSRPRPPIAAASRPPRAALGIANHITQYIKWEGLSGAPKPSGMQCMICKRDLAFTPEGPISVERNLPPVSVLACHHHFHS FCLERITPKEQAGEPPCIPCAMGGVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	0	1
AT5G50170			C2 calcium/lipid-binding and G...		Lus10037679 [exp]	4.7	0.7389
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	5.1	0.7829
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	5.3	0.7884
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	7.0	0.7478
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	15.4	0.7576
AT2G33490			hydroxyproline-rich glycoprote...		Lus10002580 [exp]	17.0	0.6463
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	17.5	0.7186
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	20.1	0.6899
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	26.2	0.7463
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	26.4	0.7644

Compare expression of checked genes

Lus10002316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.