Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12580 1068 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 1053 / 0 HSP70B heat shock protein 70B (.1) AT5G02500 1047 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 1036 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 1035 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 983 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G28540 768 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 766 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 743 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G37910 508 / 1e-172 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005953 [exp] 1066 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 1055 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 1050 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 1050 / 0 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023418 [exp] 881 / 0 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 791 / 0 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10029455 [exp] 791 / 0 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 788 / 0 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023043 [exp] 772 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042600 [exp] 1089 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 1070 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 1068 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 1066 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 1055 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 1053 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 1048 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 986 / 0 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054700 [exp] 863 / 0 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054900 [exp] 843 / 0 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10002319 pacid=23180883 polypeptide=Lus10002319 locus=Lus10002319.g ID=Lus10002319.BGIv1.0 annot-version=v1.0 ATGGCGACGAAATCAGAGGGAAAGGCGATCGGAATCGACCTGGGAACGACCTACAGCTGCGTCGGCGTATGGCAGAACGACAGGGTGGAGATCATTGCCA ACGATCAAGGCAACCGCACTACTCCATCCTACGTGGCCTTCACCGACACCGAGCGGCTCATCGGAGATGCAGCCAAGAACCAGGTGGCGATGAACCCTCA CAACACAGTCTTCGACGCCAAGCGTCTCATCGGCCGGAAATTCACCGACCCTTCCGTGCAAGGAGACATGAAGCACTGGCCGTTTAAGGTCATCTCCGGC GCCGGAGACAAGCCGATGATCGTGGTCAATTACAAAGGCGAGGACAAGCAGTTTGCTCCTGAAGAGATTTCCTCCATGGTTTTGATCAAGATGAGGGAGA TTGCTGAGGCCTTCTTGGGTCAGAGCATTAATAACGCCGTGGTCACAGTTCCGGCTTATTTCAACGACTCCCAGAGGCAGGCGACGAAAGATGCTGGTTC GATTGCTGGTCTGAATGTTCTGAGGATCATCAACGAGCCGACTGCTGCTGCGATTGCTTACGGACTCGACAAGAAAGCGTCGAGAAGCGGGGAGAAGAAC GTTCTGATCTTCGATCTCGGCGGAGGGACTTTTGATGTTTCTCTGTTGACGATTGAGGAAGGGATTTTCGAAGTAAAGGCTACGGCGGGAGATACGCATC TGGGAGGTGAGGATTTCGACAATCGTCTGGTGAATCATTTTGTATCGGAGTTCAAGAGGAAGAACAAGAAGGATATCAGCAGTAACGCTAGGGCTTTGAG GCGGTTGAGAACGGCCTGCGAGAGGGCAAAGAGGACTCTTTCTTCTACCTCTCAGACGACGATTGAAATCGATTCGTTGTATGAAGGAATCGATTTCTAC TCGTCGATTACCAGGGCGAGGTTCGAGGAATTGAACATGGATCTGTTCAGGAGGTGTATGGAGCCGGTGGAGAAGTGCCTAAGGGATGCGAAGATTGACA AGGGGGCAATCGACGACGTGGTTTTGGTCGGCGGTTCGACGAGGATTCCGAAAGTCCAGCAGCTCCTCCAGGACTTCTTCAACGGGAAAGAGCTCTGCAA GAGTATTAACCCGGATGAGGCTGTGGCGTACGGAGCCGCCGTACAGGCCGCGATTTTAAGCGGGGAAGGGAACGAGAAGGTTCAAGATCTGCTGCTGCTC GATGTCACTCCCCTCAGTCTAGGTCTGGAAACAGCCGGCGGGGTGATGACGGTTCTGATCCCGAGGAACACGACGATTCCAACGAAGAAGGAGCAGATCT TCTCGACCTATTCGGATAATCAGCCGGGAGTTCTGATTCAGGTTTACGAAGGGGAAAGGGCGAGGACTAAGGATAACAATCTGCTGGGGAAATTCGAACT TTCTGGAATTCCGCCGGCTCCGAGAGGTGTTCCACAGATCAACGTCTGCTTTGACATCGACGCGAACGGGATTCTTAATGTGTCCGCGGAGGACAAGACT GCTGGAGTGAAGAACAAAATCACGATCACGAACGATAAGGGGAGGCTGAGCAAGGAGGAGATAGAGAGGCTGGTTCAGGAGGCGGAGAGGTACAAGGCGG AGGACGAGGAGGTGAAGAAGAAAGTGGAAGCGAAGAACTCGCTGGAGAATTACGCTTATAACATGAGGAATACGATTAAAGACGAGAAGTTTGCAGCGAA GTTGGATCCGGCGGACAAGGAGAAAATCGAGAAGGCGGTTGAAGAGACGGTGCAGTGGATCGACGGGAACCAGCTGGCTGAGGTTGAGGAGTTTGAGGAT AAGTTGAAGGAGCTGGAAGCACTGTGCAATCCTATTATTTCGAAGATGTATCAGGATGGCGGTGCCGGAGATGTGCCGATGGGCGGCGCCGGTGGTGCTG ATACCTCTAGTGGCGGTGGCGGTGCAGGTCCGAAGATCGAAGAAGTTGATTGA
AA sequence Show only first row Show all	>Lus10002319 pacid=23180883 polypeptide=Lus10002319 locus=Lus10002319.g ID=Lus10002319.BGIv1.0 annot-version=v1.0 MATKSEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFTDPSVQGDMKHWPFKVISG AGDKPMIVVNYKGEDKQFAPEEISSMVLIKMREIAEAFLGQSINNAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLDKKASRSGEKN VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVSEFKRKNKKDISSNARALRRLRTACERAKRTLSSTSQTTIEIDSLYEGIDFY SSITRARFEELNMDLFRRCMEPVEKCLRDAKIDKGAIDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKT AGVKNKITITNDKGRLSKEEIERLVQEAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKFAAKLDPADKEKIEKAVEETVQWIDGNQLAEVEEFED KLKELEALCNPIISKMYQDGGAGDVPMGGAGGADTSSGGGGAGPKIEEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	0	1
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	1.0	0.9952
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	2.0	0.9834
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	2.0	0.9801
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	3.0	0.9814
AT5G07330			unknown protein		Lus10042036 [exp]	4.5	0.9447
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	5.0	0.9705
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	5.5	0.9691
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	6.6	0.9395
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10010897 [exp]	7.2	0.9300
AT1G44414			unknown protein		Lus10018166 [exp]	8.7	0.9278

Compare expression of checked genes

Lus10002319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.