Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30845 82 / 4e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026098 [exp] 202 / 2e-68 AT4G30845 94 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180200 [exp] 88 / 7e-23 AT4G30845 112 / 2e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002320 pacid=23180887 polypeptide=Lus10002320 locus=Lus10002320.g ID=Lus10002320.BGIv1.0 annot-version=v1.0 ATGGCTGCCATATGTACGGCCTCCATCGGCGCCGGAGCCACCGTCTGCCGGATCAATTGCAGCATGCCGCGAAGGAAACGCTCAGTTTCTTACATGTTGC GATTCCATCCGAAGAAATCAAAACCTTTCGCAGCAGCCAGAAGGAAGGACGATGGCGACGGCGACGACAGCGATTCATCACCGCAGCCTATGAAGCTTCC GATCGCAAAGCTTGCGGCGAGCTCTGCCACGGTTGTGTTCGCGTTGGGATTCGTGGACGCGGGATACAGCGGGGATTGGTCGAGGATTGGCGCCATATCG AATGAGACCGAAGAATTGCTAAAGGTCGCCTCGTTTCTGGTTATTCCTTTCTGCTTTTTGCTCGTCATCTCCATCTTCAAGACCGAGGTGGAGTCTTGA
AA sequence Show only first row Show all	>Lus10002320 pacid=23180887 polypeptide=Lus10002320 locus=Lus10002320.g ID=Lus10002320.BGIv1.0 annot-version=v1.0 MAAICTASIGAGATVCRINCSMPRRKRSVSYMLRFHPKKSKPFAAARRKDDGDGDDSDSSPQPMKLPIAKLAASSATVVFALGFVDAGYSGDWSRIGAIS NETEELLKVASFLVIPFCFLLVISIFKTEVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30845			unknown protein		Lus10002320 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040736 [exp]	6.7	0.8984
AT1G49975			unknown protein		Lus10033771 [exp]	7.0	0.9092
AT2G30695			unknown protein		Lus10008363 [exp]	9.3	0.9026
AT1G72690			unknown protein		Lus10008389 [exp]	10.8	0.8509
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	11.2	0.8680
AT3G52040			unknown protein		Lus10005332 [exp]	11.7	0.7854
AT5G02710			unknown protein		Lus10003988 [exp]	14.0	0.8494
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Lus10001245 [exp]	14.4	0.7984
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	16.0	0.8633
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	19.4	0.8371

Compare expression of checked genes

Lus10002320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.