Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 614 / 0 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 308 / 6e-101 HXXXD-type acyl-transferase family protein (.1) AT2G19070 263 / 2e-83 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G41040 229 / 3e-70 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 225 / 4e-69 HXXXD-type acyl-transferase family protein (.1) AT3G48720 224 / 2e-68 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G03390 162 / 1e-44 HXXXD-type acyl-transferase family protein (.1) AT1G65450 154 / 4e-42 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G27620 152 / 4e-41 HXXXD-type acyl-transferase family protein (.1) AT5G17540 134 / 1e-34 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026097 [exp] 600 / 0 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 547 / 0 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 395 / 4e-135 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 394 / 1e-134 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 307 / 1e-99 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 290 / 4e-94 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 260 / 6e-82 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 252 / 9e-79 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 239 / 4e-74 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183900 [exp] 641 / 0 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 640 / 0 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 471 / 8e-165 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 421 / 3e-145 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 419 / 2e-144 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 415 / 7e-143 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 285 / 6e-92 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 268 / 3e-85 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 233 / 8e-72 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 223 / 3e-68 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10002321 pacid=23180890 polypeptide=Lus10002321 locus=Lus10002321.g ID=Lus10002321.BGIv1.0 annot-version=v1.0 ATGAAAATCTCGGTGAAAGAATCGACGATGGTCCAGCCGGCGGAGGAGACCCCCAACGTGGGACTCTGGAACGCCAACGTTGACCTTGTGGTCCCCAGGT TTCACACCCCTAGCGTTTACTTCTACCGGCCGACTGGAGCGGCCGATTTCTTTGATCCGGCCGCTTTGAAGCTGGGCCTTGCTAAGGCCCTGGTTCCATT TTATCCGATGGCCGGCCGGTTGAGGCGTGACGAAGACGGTCGGATTGAGATAAATTGTAATGCGGAGGGTGTTCTGTTTGTGGTTGCTGAGACCACCTCT GTGATCGATGATTTTGGGGACTTTGCTCCCACTTTGGAACTCCGGCAGCTTATTCCGGCTGTGGATTACTCCGGCGGCATCTCTACCTATCCTCTCTTGG TTCTCCAGGTGACATACTTCAAGTGCGGTGGAGTCTCACTGGGAGTCGGGATGCAACACCACGCCGCCGACGGCTTCTCCGGCCTCCATTTCGTCAACAC ATGGTCCGACATGTCCAGAGGACTCGACCTCACCCTCCCTCCATTCATCGACCGGACCCTCCTCCGTGCTCGGGACCCGCCCCGACCCGCTTTCCAACAC ATAGAATACCAGCCCCCTCCCGCCCCGACCCGCTTTCCAGCACATCGAGTACCAGCCTCCTCCCTCCTTGAAAACCATCTCCTCCTCCGCCACCGCTGCA TCCGATTCCGCCGCAGTGAAAGCCTCCGACGCCGGCGTCACGCCGCCAGCAGCTGTGTCGATATTCAAGCTGACCCGGGACGAGCTCAACGCCCTGAAAG CCAAATCGAAAGAGGCAGGGGACTCGCCGACGACCAGGACACTAAACTGTACATCGCCACCGACGGAAGGTCCCGCCTCCGCCCTCCGCTCCCGGAGGGG TACTTCGGGAACGTAATATTCACGACTACCCCGGTCGCTTCCGCTGGGGATCTGGCGACAAACCCGACGTGGTTCGCAGCGGGTCGGATCCACGACGCTT TGGGGCGGATGGACGATGAGTACTTGAGATCGGCGCTGGATTACCTGGAAGTGCAGCCGGATCTTTCGGCGCTGGTGAGAGGGGCGCACACTTTCAAGTG TCCGAACTTGGGGATAACGAGTTGGGCTAGGCTTCCGATCCATGAAGCGGATTTCGGGTGGGGTAGGCCCATATTCATGGGCCCCGGTGGGATTCCGTTC GAAGGGTTGTCGTTTATACTGCCGAGCTCTAACAAGGACGGGAGTATGTCTGTGGCGATATCGTTGCAGGTGGAGCATATGAAATTGTTTGAAAAGTTCA TTTATGAGATCTAA
AA sequence Show only first row Show all	>Lus10002321 pacid=23180890 polypeptide=Lus10002321 locus=Lus10002321.g ID=Lus10002321.BGIv1.0 annot-version=v1.0 MKISVKESTMVQPAEETPNVGLWNANVDLVVPRFHTPSVYFYRPTGAADFFDPAALKLGLAKALVPFYPMAGRLRRDEDGRIEINCNAEGVLFVVAETTS VIDDFGDFAPTLELRQLIPAVDYSGGISTYPLLVLQVTYFKCGGVSLGVGMQHHAADGFSGLHFVNTWSDMSRGLDLTLPPFIDRTLLRARDPPRPAFQH IEYQPPPAPTRFPAHRVPASSLLENHLLLRHRCIRFRRSESLRRRRHAASSCVDIQADPGRAQRPESQIERGRGLADDQDTKLYIATDGRSRLRPPLPEG YFGNVIFTTTPVASAGDLATNPTWFAAGRIHDALGRMDDEYLRSALDYLEVQPDLSALVRGAHTFKCPNLGITSWARLPIHEADFGWGRPIFMGPGGIPF EGLSFILPSSNKDGSMSVAISLQVEHMKLFEKFIYEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	0	1
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	1.7	0.9720
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	2.0	0.9745
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	2.0	0.9754
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	3.5	0.9676
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	4.9	0.9713
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	5.3	0.9673
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	7.7	0.9452
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	8.4	0.9701
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	8.5	0.9643
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	9.5	0.9634

Compare expression of checked genes

Lus10002321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.