Plant FIBer expression Database

Lus10002322 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80700 114 / 1e-31 unknown protein
AT1G80980 114 / 1e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026096
[exp]
168 / 9e-53 AT1G80700 62 / 1e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G047700
[exp]
117 / 8e-33 AT1G80980 135 / 3e-39 unknown protein
Potri.003G180500
[exp]
115 / 4e-32 AT1G80700 137 / 3e-40 unknown protein
PFAM info
Representative CDS sequence
>Lus10002322 pacid=23180884 polypeptide=Lus10002322 locus=Lus10002322.g ID=Lus10002322.BGIv1.0 annot-version=v1.0
ATGTTTCGCGCCAGGCTTGCCTTGGCGCGATTGAAGCACCGTCAACTCTGCACCGGCACAGTTAAGCCCAGCAACAACAAGAAAGGAATCGGTGGTGACA
GTGGCGGTGATGGTAGCAAGCAACCGTCGAGTATTACCAGATACAATGAAACGTACAGCCAGCTGGGAAAGCTCGACTTTATGGCAGCCGCCAAGATCCT
CTTCACCGAGCCTCCAAAGAAGAAGTTTGGGCTTGATTTCCACCTGGTACAACTATTCTTCGTCTGCTTGCCATCATTGGCTGTCTATTTGGTGGCCATG
TATGCTCGTCGTGAAATGGAGAAATTTGAAACGGATTTCCAGCAAAATAAGAAGAAAGAAGAAGAGATGAAAGCAAAAGAAGAGGAGCAGAAAGCGAATG
AATTAGAAGAGAGGTCCAATGCTGCTCTATCGGAGATGAAAACGAGATTGGAGCAACTAGAAGTCGCTGTCAAGGAAATTGTGGTTGATAAAAAGAGAGG
TATCACTAATGAAGATCAACACGTTTCAAAAACCCAGTCAGGAACACCTTCCGAGTAA
AA sequence
>Lus10002322 pacid=23180884 polypeptide=Lus10002322 locus=Lus10002322.g ID=Lus10002322.BGIv1.0 annot-version=v1.0
MFRARLALARLKHRQLCTGTVKPSNNKKGIGGDSGGDGSKQPSSITRYNETYSQLGKLDFMAAAKILFTEPPKKKFGLDFHLVQLFFVCLPSLAVYLVAM
YARREMEKFETDFQQNKKKEEEMKAKEEEQKANELEERSNAALSEMKTRLEQLEVAVKEIVVDKKRGITNEDQHVSKTQSGTPSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80700 unknown protein Lus10002322
[exp]
0 1
AT5G60440 MADS AGL62 AGAMOUS-like 62 (.1) Lus10037450
[exp]
6.0 0.8080
AT2G02870 Galactose oxidase/kelch repeat... Lus10030489
[exp]
22.5 0.8007
AT2G02880 mucin-related (.1) Lus10030486
[exp]
30.8 0.7772
AT5G11970 Protein of unknown function (D... Lus10021581
[exp]
39.4 0.7961
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10021746
[exp]
56.1 0.7656
AT5G11500 unknown protein Lus10038625
[exp]
63.2 0.7782
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10003055
[exp]
70.8 0.7879
AT5G38820 Transmembrane amino acid trans... Lus10018652
[exp]
85.4 0.7519
AT1G14300 ARM repeat superfamily protein... Lus10037185
[exp]
124.1 0.7648
AT3G22480 PDF2 prefoldin 2 (.1.2) Lus10010556
[exp]
134.6 0.7530

Lus10002322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.