Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80670 608 / 0 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 207 / 2e-66 Transducin/WD40 repeat-like superfamily protein (.1) AT3G19590 210 / 8e-65 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 198 / 2e-60 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 120 / 5e-31 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 71 / 8e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 65 / 3e-11 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G15900 64 / 6e-11 PRL1 pleiotropic regulatory locus 1 (.1) AT3G18130 63 / 6e-11 RACK1C_AT receptor for activated C kinase 1C (.1) AT3G16650 63 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026095 [exp] 698 / 0 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003954 [exp] 200 / 8e-61 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 191 / 4e-57 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026051 [exp] 96 / 4e-22 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014343 [exp] 96 / 7e-22 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003487 [exp] 67 / 6e-12 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 66 / 2e-11 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 64 / 2e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 64 / 2e-10 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048100 [exp] 585 / 0 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G180000 [exp] 585 / 0 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G295100 [exp] 204 / 1e-62 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 203 / 4e-62 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 111 / 1e-27 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 102 / 2e-24 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G052700 [exp] 71 / 1e-13 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 69 / 1e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 68 / 1e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 67 / 5e-12 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10002323 pacid=23180868 polypeptide=Lus10002323 locus=Lus10002323.g ID=Lus10002323.BGIv1.0 annot-version=v1.0 ATGGCTACCTTCGGTGCAGCCTCCGCCGGAAACACTAATCCGAACAAATCCTTTGAGGTGATTCAACCCCCGACGGACTCCGTTTCCAGTCTCTGCTTCA GTCCTAAGGCAAACCACTTGGTGGCTACATCGTGGGATAATCAGGTGCGATGTTGGGAAATCTCAAGGAATGCAAGCACTGTAACTAGTGCGCCCAAGGC ATCAATGTCACATGACCAGCCGGTGTTGTGCTCTGCCTGGAAGGATGATGGAACAGCTGTTTTCTCCGGCGGATGTGACAAACAAGTTAAGATGTGGCCG TTGCTCTCAGGAGGCCAAGCTGTGACTGTAGCCATGCATGACGCACCAGTTAAAGAAGTAGCTTGGATTCCTGAGATGAGCCTCTTAGTGTCAGGCAGTT GGGATAAGACCTTGAAATACTGGGATACCAGGCAGTCAAATCCAGTTCATACTCAGCAGCTTCCTGATCGTTGTTATTCTATGTCGGTGCGCCACCCACT TATGGTTGTGGGCACTGCAGACAGGAACCTCGTAGTCTTCAACCTGCAAAATCCTCAGACCGAATTCAAGAGAATTCCTTCGCCACTGAAGTATCAGACA AGATGTGTAGCTGCATTCCCTGACCAACAAGGATTTTTGGTTGGTTCGATAGAAGGAAGAGTTGGTGTACATCATCTTGATGATGCTCAGCAGGGTAAAA ACTTCACTTTTAAGTGCCACAGAGAATCAAATGATATCTACTCAGTGAACTCCTTGAACTTCCATCCGATGCACCATACGTTTGCAACAGCAGGATCTGA TGGTGCTTTTAATTTCTGGGATAAGGACAGCAAACAGAGGCTGAAGGCCATGTCAAGGTGCAACCAGCCAATAACATGCAGTGCATTTAACAGTGATGGC TCTATATACGCGTATGCGGTTTGTTATGACTGGAGCAAAGGTGCTGAAAACCACAATCCAGCAGCGGCAAAAACCAGCATCTTTCTCCATTTACCACAGG TGGGTGGTGCAATATTTCCTTTTCACTCTTTTGCTAAACCTTTCAACTCCTTGCTTGCTCAGACTGGAGATGTCGACTGCGATGACATGTTTTTGTTGTT GCTAAAAATGGTGCAGGAGTCGGAGGTGAAAGCAAAGCCCCGTGCTGCAACAGGTGGCAGAAGGTGA
AA sequence Show only first row Show all	>Lus10002323 pacid=23180868 polypeptide=Lus10002323 locus=Lus10002323.g ID=Lus10002323.BGIv1.0 annot-version=v1.0 MATFGAASAGNTNPNKSFEVIQPPTDSVSSLCFSPKANHLVATSWDNQVRCWEISRNASTVTSAPKASMSHDQPVLCSAWKDDGTAVFSGGCDKQVKMWP LLSGGQAVTVAMHDAPVKEVAWIPEMSLLVSGSWDKTLKYWDTRQSNPVHTQQLPDRCYSMSVRHPLMVVGTADRNLVVFNLQNPQTEFKRIPSPLKYQT RCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQGKNFTFKCHRESNDIYSVNSLNFHPMHHTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPITCSAFNSDG SIYAYAVCYDWSKGAENHNPAAAKTSIFLHLPQVGGAIFPFHSFAKPFNSLLAQTGDVDCDDMFLLLLKMVQESEVKAKPRAATGGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10002323 [exp]	0	1
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	2.0	0.9570
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	2.8	0.9532
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10006565 [exp]	3.9	0.9552
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	4.9	0.9561
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	6.9	0.9474
AT1G24310			unknown protein		Lus10015795 [exp]	8.5	0.9486
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	8.8	0.9510
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10037763 [exp]	11.5	0.9372
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	12.7	0.9491
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	13.7	0.9418

Compare expression of checked genes

Lus10002323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.