Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15980 397 / 1e-131 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 395 / 4e-131 structural molecules (.1.2.3.4.5) AT1G52360 392 / 8e-130 Coatomer, beta' subunit (.1.2) AT1G62020 171 / 2e-47 Coatomer, alpha subunit (.1) AT2G21390 171 / 2e-47 Coatomer, alpha subunit (.1) AT3G49660 103 / 5e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 99 / 9e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 91 / 1e-19 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G13480 87 / 9e-19 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 87 / 1e-18 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026094 [exp] 576 / 0 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10033092 [exp] 377 / 8e-124 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 328 / 8e-112 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 323 / 3e-103 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037538 [exp] 171 / 1e-47 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 171 / 3e-47 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 171 / 3e-47 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 170 / 7e-47 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 167 / 7e-46 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250200 [exp] 401 / 5e-140 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 395 / 4e-131 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 392 / 1e-129 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.015G069700 [exp] 171 / 2e-47 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 171 / 3e-47 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.007G009500 [exp] 95 / 6e-22 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 94 / 6e-22 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 92 / 4e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 91 / 5e-20 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.006G263400 [exp] 90 / 1e-19 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10002324 pacid=23180869 polypeptide=Lus10002324 locus=Lus10002324.g ID=Lus10002324.BGIv1.0 annot-version=v1.0 ATGGGGTGCTTGTTTCCATTTTGCCTCTCTTTGCTTTGTTCTAACTTACTCTGTCTTGCTTGTTCCCAAACATATTTGGACAAATACCAGGCCTTCCAAA TTGAGAAAACGTTTTTCCAAGCTTCAGAGAGGGTTAAGTCTGTAGATTTCCATACATCTCAGCCATGGATTTTGTTGAGTTTGCATTCAGGACAAGTCTG CATTTGGAACTTCCAGACTCAGGCACTGGTTAAGGCCTTCAAGGCCACGGATTCCCCAGTAAGAACAGCCAAGTTCATTCCAAGGAAGCTGTGGATTGTG ACAGGATCCGACGATGGAAAGATCCGGGTCTATGATGAAGGTTCCTTTGAGCTTGTTAAGGAGTTTGATGCTCACCAGGATTTCATCAGAAGCGTGGCTG TCCACCCCACGCTTCCGATCTTGATCTCAGCTTCTGACGATAAGGCTGTGAAGCAGTGGGATTGGGAGAAAGACTGGGAATGCACTCAAGTCTACGATGG ACACTCGCATTATGTGATGCAGGTTGTGTTCAATCCACTGGATGCCAATTCGTTCGCAACTGCATCACTTGACAACTCTGTTAAGATATGGAATCTTGGA TCCCCTGCTGCAGTTGGCTCATTGGACGGACACCTGAAAGGAGTGAACAGTGTGGATTATCTGGTCTCCAAAGATGATCACAAACTGCACCTTCTGAGTG GCTCTGATGATTTCTCAGTCAAGGTTTGGGACATGGAAACAAAACATTGCGTCCAGACTCTGGAAGGCCACACGAACAACGTTTCGATAGTGGCTTCCCA TCCGGAGCTCCCAATCTTCATTTCCGGATCTGAAGATGGGACCATTAACATCTGGGACGCCGCCACTTTCAAGGTTATCGAAACTTTGAACTACGGGCTA GAAAGAGTGTGGGCTGTTGGGTACAAGCAAGGCTCGAAGCAGGTGGGATTTGGGTGCGACAAAGGGACTGTTATGGTGAATGTTACCAGCCTTTAG
AA sequence Show only first row Show all	>Lus10002324 pacid=23180869 polypeptide=Lus10002324 locus=Lus10002324.g ID=Lus10002324.BGIv1.0 annot-version=v1.0 MGCLFPFCLSLLCSNLLCLACSQTYLDKYQAFQIEKTFFQASERVKSVDFHTSQPWILLSLHSGQVCIWNFQTQALVKAFKATDSPVRTAKFIPRKLWIV TGSDDGKIRVYDEGSFELVKEFDAHQDFIRSVAVHPTLPILISASDDKAVKQWDWEKDWECTQVYDGHSHYVMQVVFNPLDANSFATASLDNSVKIWNLG SPAAVGSLDGHLKGVNSVDYLVSKDDHKLHLLSGSDDFSVKVWDMETKHCVQTLEGHTNNVSIVASHPELPIFISGSEDGTINIWDAATFKVIETLNYGL ERVWAVGYKQGSKQVGFGCDKGTVMVNVTSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10013770 [exp]	3.7	0.9634
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10026094 [exp]	4.0	0.9574
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	4.4	0.9296
AT1G17860			Kunitz family trypsin and prot...		Lus10007890 [exp]	8.8	0.9526
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	9.5	0.9436
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	10.6	0.9343
AT5G62350			Plant invertase/pectin methyle...		Lus10031133 [exp]	13.6	0.9208
AT1G17860			Kunitz family trypsin and prot...		Lus10039209 [exp]	16.1	0.9352
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	16.7	0.9419
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	17.2	0.9464

Compare expression of checked genes

Lus10002324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.