Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07560 507 / 5e-174 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT4G30190 505 / 3e-173 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT5G57350 504 / 1e-172 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G42640 503 / 3e-172 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G18960 502 / 7e-172 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT1G80660 500 / 2e-171 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G47950 487 / 7e-166 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G62670 486 / 1e-165 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT2G24520 459 / 3e-155 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G60330 454 / 5e-153 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024105 [exp] 535 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 517 / 9e-178 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026093 [exp] 506 / 8e-175 AT1G80660 912 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10001631 [exp] 500 / 6e-171 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10019593 [exp] 484 / 3e-165 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10042183 [exp] 478 / 2e-162 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10003259 [exp] 478 / 2e-162 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10001437 [exp] 472 / 6e-161 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10013483 [exp] 459 / 3e-156 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275000 [exp] 514 / 1e-176 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G112400 [exp] 513 / 3e-176 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G165900 [exp] 512 / 9e-176 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 510 / 3e-175 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G188600 [exp] 508 / 3e-174 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 505 / 4e-173 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G006000 [exp] 495 / 4e-169 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.015G066000 [exp] 484 / 9e-165 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 483 / 3e-164 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.001G048300 [exp] 468 / 2e-160 AT2G07560 1193 / 0.0 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus
Representative CDS sequence Show only first row Show all	>Lus10002325 pacid=23180880 polypeptide=Lus10002325 locus=Lus10002325.g ID=Lus10002325.BGIv1.0 annot-version=v1.0 ATGGCAATCGGCCTGGAAGAAATAAAAAATGAGAATGTCGACCTTGAGCGCATTCCGGTGGAGGAAGTGTTCCAGCAGCTGCAATGCTCGAGGAGCGGCC TGACGGCCGATGAAGGACAGAAAAGGCTGGCGATCTTCGGGCCAAACAAGCTCGAAGAGAAGAAAGAGAACAAATTTCTCAAATTTCTTGGATTCATGTG GAATCCTCTGTCATGGGTCATGGAGATTGCAGCAATCATGGCCATTGCTTTGGCCAACGGAGGAGGCCAACCGCCGGATTGGCAAGATTTCGTCGGAATC GTGACGCTCCTTGTGATCAACTCGACTATCAGTTTCATCGAAGAAAACAACGCGGGAAATGCCGCAGCTGCTCTCATGGCGGGACTGGCTCCCAAGACGA AAGTGTTGAGAGATGGGAAATGGTCTGAACAAGATGCTGCACTTTTAGTTCCTGGAGATATGATCAGCATCAAATTGGGTGATATCGTCCCAGCTGATGC TCGTCTCCTTGAAGGTGATCCTTTAAAGATCGACCAGTCTGCTCTCACCGGAGAGTCCTTGCCCGTCACGAAAAACTCCGGCGATGAAGTTTTCTCCGGC TCCACCTGTAAACAGGGTGAGCTCGAAGCCGTTGTTATAGCCACCGGAGTTCACACCTTCTTCGGCAAGGCAGCTCACCTCGTGGATAGCACCAACAACG AAGGACATTTCCAAAAGGTTTTGACAGCAATTGGAAACTTTTGTATATGCTCAATTGCTGCGGGTATGCTTGTTGAGATCATAGTGATGTACCCAATCCA ACACAGGAGGTACAGAGATGGAATCGACAATCTCTTGGTGCTTCTCATTGGAGGAATCCCCATTGCCATGCCAACTGTTTTGTCAGTGACCATGGCTATT GGATCCCATCGCCTTTCCCAGCAAGGTGCAATCACTAAGAGGATGACAGCCATTGAGGAAATGGCTGGGATGGGCTGGAATGGATGTATTGTGCAGTGA
AA sequence Show only first row Show all	>Lus10002325 pacid=23180880 polypeptide=Lus10002325 locus=Lus10002325.g ID=Lus10002325.BGIv1.0 annot-version=v1.0 MAIGLEEIKNENVDLERIPVEEVFQQLQCSRSGLTADEGQKRLAIFGPNKLEEKKENKFLKFLGFMWNPLSWVMEIAAIMAIALANGGGQPPDWQDFVGI VTLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAALLVPGDMISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNSGDEVFSG STCKQGELEAVVIATGVHTFFGKAAHLVDSTNNEGHFQKVLTAIGNFCICSIAAGMLVEIIVMYPIQHRRYRDGIDNLLVLLIGGIPIAMPTVLSVTMAI GSHRLSQQGAITKRMTAIEEMAGMGWNGCIVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	0	1
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10029421 [exp]	5.8	0.8920
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10036983 [exp]	6.0	0.9225
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	6.2	0.9265
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	12.7	0.9224
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10019644 [exp]	13.0	0.8501
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	13.1	0.9179
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	14.5	0.9112
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	14.9	0.8554
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	15.5	0.8530
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	21.3	0.9075

Compare expression of checked genes

Lus10002325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.