Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80660 920 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G42640 890 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT4G30190 876 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 875 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT2G07560 873 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G57350 865 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G24520 852 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G62670 848 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 840 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 723 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024105 [exp] 994 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026093 [exp] 934 / 0 AT1G80660 912 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 897 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026944 [exp] 895 / 0 AT2G24520 1128 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10007948 [exp] 894 / 0 AT4G30190 998 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001631 [exp] 894 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001437 [exp] 883 / 0 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026224 [exp] 837 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10003259 [exp] 831 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188600 [exp] 917 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 913 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 906 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 904 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G090300 [exp] 902 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.003G179800 [exp] 901 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.006G165900 [exp] 899 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G006000 [exp] 883 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.015G066000 [exp] 838 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 836 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10002326 pacid=23180875 polypeptide=Lus10002326 locus=Lus10002326.g ID=Lus10002326.BGIv1.0 annot-version=v1.0 ATGTTGGGTGACCCCAAAGAGGCTAGAGCTGGAATTGAAGAGGTTCATTTCTTGCCATTCAATCCAGTTGAAAAGCGTACCGCTATCACCTACATTGACG GGCAAGGAAACTGGCATAGAGCTAGCAAAGGTGCTCCAGAGCAAATTATTGAGCTTTGCAATCTTTCTCCTGATGTCAAGAAGAAAGCTCTTTCCATCAT TGACAAGTTTGCTGATCGTGGCTTACGTTCATTGGCTGTCGGTCGCCAAACTGTGCCAGAGAAGACAAAAGAAAGCGCTGGAGGACCATGGCAATTCGTT GGTCTCTTGCCTCTCTTTGATCCACCAAGACATGATAGTGCTGAGACAATCAGACGTGCTCTCCATCTTGGTGTGAATGTCAAGATGATCACTGGTGATC AGCTGGCCATCGGAAAAGAGACTGGACGAAGGCTTGGTATGGGAACCAATATGTACCCATCCTCTGCTCTTTTGGGCCAACACAAGGACGAGTCAATTGC AAGCATCCCGGTTGACGAGTTGATCGAGAAGGCCGACGGATTCGCTGGAGTCTTCCCGGAACACAAGTATGAAATCGTGAAGAGGCTTCAGGACAAGAAA CATATATGTGGTATGACTGGAGATGGTGTGAATGATGCTCCAGCGTTAAAGAAAGCCGACATTGGAATTGCAGTGGCAGATGCTACTGATGCAGCCAGGG GTGCCTCCGACATCGTCCTCACCGAGCCTGGACTCAGTGTGATTGTCAGCGCTGTGCTAACCAGCAGAGCTATCTTCCAGAGGATGAAGAACTACACAAT CTATGCAGTCTCCATCACGATCCGTATCGTGCTTGGATTCATGTTGATTGCACTCATCTGGAAGTTTGACTTCTCCCCTTTCATGGTTCTCATCATTGCC ATCCTTAATGACGGCACAATCATGACTATCTCCAAGGATAGGGTAAAGCCGTCTCCAATGCCAGATTCGTGGAAGCTTAAGGAGATCTTCGCTACTGGTG TTGTGTTGGGTACTTATATGGCTGTAATGACAGTCATCTTCTTCTATGGTGCTTATGGCTCTGATTTTTTCTCGGAGAAGTTCCATGTGAGGTCGATTAG GCACAACCCAGATGAGTTGACTTCAGCTTTGTACTTGCAAGTTAGCATTGTGAGCCAAGCACTCATCTTTGTCACCCGATCTCGAAGCTGGTCCTTTGTC GAACGCCCTGGACCAATGCTTCTATTCGCATTCCTTGTCGCCCAATTGGTTGCAACACTTATTGCAGTATATGCCAACTGGGAATTCGCAAGGGTGAAAG GAATCGGGTGGGGATGGGCAGGAGTCATCTGGGTTTACAGCATCGTATTCTACATTCCACTCGACATCCTTAAGTTCATCATCCGATATGCATTGAGCGG CAAAGCCTGGGACAATGTTACTCAAAGAAGGACTGCTTTCAACAACAAGAACGACTTCGGAAAAGGCGAGAGGGAGGCTCAATGGGCAGCGGATCAGCGC ACCCTCCACGGACTTCAGCCACCGGAAAACGCAGATCAGCTCTTCAATGACAAGACCAACTACAGGGAACTGTCGGAGATCGCAGAGCAAGCTAAGAGGC GTGCTGAGGTTGCTAGGCTAAGGGAGCTCCACACTTTGAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAGGGATTGGACATCGAGACAATCCAACAGCA TTACACAGTTTGA
AA sequence Show only first row Show all	>Lus10002326 pacid=23180875 polypeptide=Lus10002326 locus=Lus10002326.g ID=Lus10002326.BGIv1.0 annot-version=v1.0 MLGDPKEARAGIEEVHFLPFNPVEKRTAITYIDGQGNWHRASKGAPEQIIELCNLSPDVKKKALSIIDKFADRGLRSLAVGRQTVPEKTKESAGGPWQFV GLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQHKDESIASIPVDELIEKADGFAGVFPEHKYEIVKRLQDKK HICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIA ILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGTYMAVMTVIFFYGAYGSDFFSEKFHVRSIRHNPDELTSALYLQVSIVSQALIFVTRSRSWSFV ERPGPMLLFAFLVAQLVATLIAVYANWEFARVKGIGWGWAGVIWVYSIVFYIPLDILKFIIRYALSGKAWDNVTQRRTAFNNKNDFGKGEREAQWAADQR TLHGLQPPENADQLFNDKTNYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	0	1
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	3.7	0.9239
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	8.8	0.8967
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10026284 [exp]	9.2	0.8958
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	9.2	0.9133
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	9.5	0.9062
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	9.5	0.9213
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	9.9	0.8974
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	10.2	0.9199
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	10.5	0.9108
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	11.8	0.9040

Compare expression of checked genes

Lus10002326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.