Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29195 47 / 1e-06 unknown protein AT2G30230 43 / 4e-05 unknown protein AT1G06980 42 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026092 [exp] 258 / 1e-88 ND 42 / 5e-05 Lus10036859 [exp] 67 / 5e-14 AT1G06980 41 / 1e-04 unknown protein Lus10006211 [exp] 66 / 2e-13 AT1G06980 39 / 9e-04 unknown protein Lus10025927 [exp] 65 / 5e-13 AT1G06980 43 / 4e-05 unknown protein Lus10038171 [exp] 59 / 7e-11 AT1G06980 46 / 2e-06 unknown protein Lus10020386 [exp] 59 / 1e-10 AT1G06980 44 / 3e-05 unknown protein Lus10009561 [exp] 58 / 2e-10 AT1G06980 44 / 1e-05 unknown protein Lus10042244 [exp] 39 / 0.001 AT1G06980 173 / 1e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179600 [exp] 107 / 4e-29 ND / Potri.010G046225 [exp] 67 / 1e-13 ND / Potri.002G217100 [exp] 66 / 2e-13 ND / Potri.002G242400 [exp] 64 / 4e-12 AT1G06980 45 / 9e-06 unknown protein Potri.008G186700 [exp] 62 / 4e-12 AT5G50090 41 / 1e-04 unknown protein Potri.001G048400 [exp] 61 / 1e-11 ND / Potri.014G170000 [exp] 49 / 5e-07 ND / Potri.011G066500 [exp] 39 / 0.0008 AT1G29195 170 / 6e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002327 pacid=23180878 polypeptide=Lus10002327 locus=Lus10002327.g ID=Lus10002327.BGIv1.0 annot-version=v1.0 ATGGTCAATTCCGACAGTTGTTTCTACAACAAAAAAAGCAAGGTAGTCCGGATCGTATACCCGGGCGGTCACATCGAGCTCCACGACAATCCTATCCTTG CCGGAGAGATCATGGCCAAACACCCCAAATTCGTGGTGGCCCAACCAGAAGTGTTCCGGCTGCCGTTATCAGCGGTGGTTTCGCCGGAGACCACACTGAT GCTGGGCCAGAAATTCTACGCGGTGCCGGCGAGCACCATCAGGAAGCTTCAGAGGAAGTACATTAAGCGTAACCCATTATCATCAGCCGAAGGTCATTAT CGTAATTATGCTTATGATAATAGTAGTAGTAACAGGAGAGTTGGTTGCTTAAGCAACATGATTACGATGATGACTGGTTTCGGTCATCATCGTAATCGCG ATATTAATGATGATTATCGTATGGTGCGGATTGTTTATAATGGGGATCGTAGCTCCGGCGGTAGCAGCGGGAGTTTTGGGTCTCCGGTCGGGAAGAGATC GCCGGCGTCGTCGCCGAAGAAAGGGATGCATATGGATTATTACTGGACACCAAATCTCGAGAGCATCACTGAATAA
AA sequence Show only first row Show all	>Lus10002327 pacid=23180878 polypeptide=Lus10002327 locus=Lus10002327.g ID=Lus10002327.BGIv1.0 annot-version=v1.0 MVNSDSCFYNKKSKVVRIVYPGGHIELHDNPILAGEIMAKHPKFVVAQPEVFRLPLSAVVSPETTLMLGQKFYAVPASTIRKLQRKYIKRNPLSSAEGHY RNYAYDNSSSNRRVGCLSNMITMMTGFGHHRNRDINDDYRMVRIVYNGDRSSGGSSGSFGSPVGKRSPASSPKKGMHMDYYWTPNLESITE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29195			unknown protein		Lus10002327 [exp]	0	1
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000202 [exp]	1.0	0.9012
					Lus10028018 [exp]	9.9	0.7024
AT3G23550			MATE efflux family protein (.1...		Lus10012960 [exp]	12.6	0.7691
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	23.4	0.7219
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	26.3	0.7156
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	32.5	0.7034
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	32.9	0.6990
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	33.3	0.6990
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	33.7	0.6990
					Lus10021773 [exp]	34.1	0.6990

Compare expression of checked genes

Lus10002327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.