Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32000 422 / 8e-147 Protein kinase superfamily protein (.1.2) AT2G25220 421 / 3e-146 Protein kinase superfamily protein (.1.2) AT5G11020 415 / 8e-144 Protein kinase superfamily protein (.1) AT1G80640 409 / 2e-141 Protein kinase superfamily protein (.1.2) AT3G58690 269 / 6e-87 Protein kinase superfamily protein (.1) AT1G61860 249 / 3e-79 Protein kinase superfamily protein (.1) AT3G20530 248 / 8e-79 Protein kinase superfamily protein (.1) AT5G56890 256 / 1e-76 Protein kinase superfamily protein (.1) AT2G20300 250 / 3e-76 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G02800 238 / 2e-75 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026091 [exp] 710 / 0 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10041026 [exp] 396 / 2e-136 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10001937 [exp] 379 / 2e-129 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 288 / 3e-93 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10029948 [exp] 253 / 1e-79 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10033606 [exp] 250 / 2e-79 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 246 / 3e-78 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 243 / 4e-77 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 242 / 2e-76 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048500 [exp] 550 / 0 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 474 / 2e-167 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.006G260100 [exp] 400 / 1e-137 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.018G022300 [exp] 394 / 4e-135 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 265 / 2e-85 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 254 / 1e-81 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 255 / 3e-81 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 261 / 2e-79 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 248 / 3e-78 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 253 / 5e-77 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10002328 pacid=23180874 polypeptide=Lus10002328 locus=Lus10002328.g ID=Lus10002328.BGIv1.0 annot-version=v1.0 ATGGGTGTGGTCAGAGTAGTGCACAGCCAAGACTTGAACAAGAAAATCCTCATAGCGCTAATTGTAGCTTCTACTTTGCTGGGTGTGATCTTGCTAACCC TATCAATTATTTGGATCTACTGGCTTATTACCACCAAGACCAAAAACAGGCCTCCAAAACATAACTTATCAGATGGTGGTGGTGCCAAAGGCCCTTCCTT GGATCCGATTTCGGATGCCTTGAGACTGGCTGGGAAGAAGAAGAACTCAATTGTGGCTATGGAGTATAAGTTGTTGGAAGCTGCAACCAACTCTTTCAAC GAAAGCAATGTGCTTGGGGAAGGTTGTCATGGGCGTGTCTATGGTGCTTATTTTGACAAGAAGCTCTCTGCTGCTGTTAAGAGATTGGAAGGTAGAGGGC AGGATGTTGCCAGAGAGTTCGAGAATGAGGTGAAGTGGCTGACTAAGTTTGAGCATCAGAACGTAATTTCTGTTCTAGGCCACTGCTGTCATGATGGAAC CAGGTTTTTAGTGTATGAAATGATGCAAAATGGGTCTTTGGAGAGTCAATTGCATGGAGCTACAAATGGAGCAGCATTGACTTGGCATGTTAGGCTAAAA ATTGCAGTGGATATTGCCAGGGGGCTAGAGTATCTTCATGAGCATTGCAACCCTCCAGTTGTACATAGAGACATCAAATCATCTAACATTCTTCTGGATT CTGACTTCAATGCCAAACTTTCAGACTTTGGGTTAGCAGTAACATCTGGGAACCAAAACAAGAACATAACACTTAAAGGAACACTAGGCTACGTCGCCCC GGAGTACCTTCTCCACGGCGAACTGACAGAGAAAAGTGATGTATATGCGTATGGGGTGGTTCTTCTTGAGCTCCTGACTGGAAGAAAGCCAGTGGAGGAG TTGTCATCAGAACAGTGCCAATCATTAGTGTCATGGGCAATGCCCCAACTCACAGACAGAACAAAGCTTCCAGACATCGTGGACTCCACCATGAAGCACA GCATGGATCTCAAACATCTATACCAGGTGGCAGCAGTGGCTGTGTTGTGTGTGCAACAAGAACCAAGTTATAGGCCATTGATCACAGATGTTCTTCACTC CCTCATTCCATTAGTACCTCTTGAGCTTGGAGGATCTCTCAGGATCATTTACAGAGATGATGATGCCGACTAA
AA sequence Show only first row Show all	>Lus10002328 pacid=23180874 polypeptide=Lus10002328 locus=Lus10002328.g ID=Lus10002328.BGIv1.0 annot-version=v1.0 MGVVRVVHSQDLNKKILIALIVASTLLGVILLTLSIIWIYWLITTKTKNRPPKHNLSDGGGAKGPSLDPISDALRLAGKKKNSIVAMEYKLLEAATNSFN ESNVLGEGCHGRVYGAYFDKKLSAAVKRLEGRGQDVAREFENEVKWLTKFEHQNVISVLGHCCHDGTRFLVYEMMQNGSLESQLHGATNGAALTWHVRLK IAVDIARGLEYLHEHCNPPVVHRDIKSSNILLDSDFNAKLSDFGLAVTSGNQNKNITLKGTLGYVAPEYLLHGELTEKSDVYAYGVVLLELLTGRKPVEE LSSEQCQSLVSWAMPQLTDRTKLPDIVDSTMKHSMDLKHLYQVAAVAVLCVQQEPSYRPLITDVLHSLIPLVPLELGGSLRIIYRDDDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	1.0	0.9782
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	4.6	0.9554
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	5.8	0.9644
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	6.3	0.9598
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	8.1	0.9600
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10012335 [exp]	9.8	0.9024
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	10.9	0.9477
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	12.2	0.9484
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	12.8	0.9568
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	13.8	0.9516

Compare expression of checked genes

Lus10002328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.