Plant FIBer expression Database

Lus10002329 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79690 799 / 0 ATNUDT3 nudix hydrolase homolog 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026103
[exp]
1028 / 0 AT1G79690 1136 / 0.0 nudix hydrolase homolog 3 (.1)
Lus10024090
[exp]
754 / 0 AT1G79690 885 / 0.0 nudix hydrolase homolog 3 (.1)
Lus10041626
[exp]
509 / 1e-175 AT1G79690 490 / 4e-166 nudix hydrolase homolog 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G185600
[exp]
872 / 0 AT1G79690 1216 / 0.0 nudix hydrolase homolog 3 (.1)
Potri.003G185951
[exp]
870 / 0 AT1G79690 1218 / 0.0 nudix hydrolase homolog 3 (.1)
Potri.003G185776
[exp]
869 / 0 AT1G79690 1214 / 0.0 nudix hydrolase homolog 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF03571 Peptidase_M49 Peptidase family M49
Representative CDS sequence
>Lus10002329 pacid=23180863 polypeptide=Lus10002329 locus=Lus10002329.g ID=Lus10002329.BGIv1.0 annot-version=v1.0
ATGTGCTCAAGGTACAATGAAGATGCCGAAGCACAGAAGGTGTCACTACAAAAGCAACTGCAGCGTTATGCTCCTGTGTCTCTCAGTGCCGAGCTGACAG
GGCTAACAGAATCAGACAAGGAGGCGTTAATTTTGATAATGAAGGCTGCAAAGATCATGGATGATATCTTCTACCTCCAGCGCTACCAGAGTATTGACCG
TTCTCAATCTGTTAAGGTTTGGGAGAGCAATCCGGTTTTAAGAGATTGGTTGATTAAACATGCTGATGTTTCAGAACTCGACAGACTAAAATGCAAATAC
TATATGATCAACAAGGGCCCATGGTCCTGTCTTGATGAGAATCAGCCTTTTTTGACAACCAAAGACTCAGCCCGGAAGTTGATTCCCGAAGCCACAAAAC
CAGTGAGTGGATGGAAGGGTCTAGGGTATAAAGCGGCATTTCCTACTCTGAAACCATCCGGTGCAAACTTCTACCCTCCAGACATGGACAAAATGGAATT
TGAATCATGGAAGAACAACTTGTCACAAGAAGATGAGGCAACGAGCTTTTTCACAGTTATAAAAAGGCACAGTGAAGGCTCCTCTTCTTTGGATCATACA
ACGAGCAACAAAAGTCACTTGGCAGGATATGGGGATCTGTATGCTGTTCCATACTCTGCAGAATACAAAGCTTTCCTCACTAATGCTTCTGACCTTTTGC
ATAAAGCAGGTGACTTAGCCAGCTTGCCAAGTTTGAAGAGGTTTCTTCATAGCAAGGCTGATGCGTTCCTGTCAAATGACTATTATGATTCTGACATTGC
CTGGATGGAATTGGACTCTAAGCTTGATGTTACAATAGGTCCATACGAGACATATGAAGATTCACTTTTTGGATACAAGGCTACATTTGAAGCATTTGTT
GGGATTCGAGATGACGAGGCTACAGCTCAACTAAAAATGTTTGGTGATAATTTACAGGTTTTGGAGGAAAATCTTCCAATGGATAACATTTACAAATCAA
CAGATATTAATGTTGCTCCTATTCGTGTCATAAAACTGCTTTATAATGCTGGGGATGTTAAAGGTCCTCAAACTGTTGCTTTCAATCTACCGAATGATGA
GCGAATAGTGAACGATCGAGGAACTTCAATGGTTATGCTTAAGAATGTTTCCGACGCAAAGTTCAAACACATTCTTCGACCTATAGCTGATGTATGCATT
TCTAAGGAGCAAAACCACCTCGTAGATTTTGATTCATTCTTTACTCATACCATCTGTCATGAGTGCTGCCATGGTATTGGACCTCACACTATAGTTCTTC
CAGATGGGCAGAAGTCCACAGTAAGAAAGGAGCTTCAAGAACTCCACTCTGCTTTGGAAGAAGCTAAAGCTGATATAGTTGGACTCTGGGCACTCAAGTT
TATGATCTGTCAGGATGCTTCCGCTCGGTTCGATTCGGCTTGGAGGAAGCTCATGGGTATAATCCGATCAAAGCACCTGCCTTTATTCGCTCTCTCATCT
TTCTTCATTAATCTCACATATAATTTGTTGGACACTCCCAGAAAAGGAGAAGCGTTGCAGTTCAACTGGCTGTTCGAGAAAGGAGCCTTCAAGTTGCATC
CGGACGAGACTTTCTCTGTCGATTTTGCAAAGGTTGACGAGGCGGTGAAAAGCTTGAGCTCTGAGATCCTTACGATCCAGGCAAAGGGTGACAAAAGCGC
TGCAAGCTTACTCCTCCAGAAGTACTGTGAAATGACCCCTCCACTGAAACTTGCATTGTCAAAACTGGAGAGTATTCAGGTGCCGGTGGACATAGCTCCC
AGTTTCCCCTTAGCAACTGAGTTACTGCAGCAATGA
AA sequence
>Lus10002329 pacid=23180863 polypeptide=Lus10002329 locus=Lus10002329.g ID=Lus10002329.BGIv1.0 annot-version=v1.0
MCSRYNEDAEAQKVSLQKQLQRYAPVSLSAELTGLTESDKEALILIMKAAKIMDDIFYLQRYQSIDRSQSVKVWESNPVLRDWLIKHADVSELDRLKCKY
YMINKGPWSCLDENQPFLTTKDSARKLIPEATKPVSGWKGLGYKAAFPTLKPSGANFYPPDMDKMEFESWKNNLSQEDEATSFFTVIKRHSEGSSSLDHT
TSNKSHLAGYGDLYAVPYSAEYKAFLTNASDLLHKAGDLASLPSLKRFLHSKADAFLSNDYYDSDIAWMELDSKLDVTIGPYETYEDSLFGYKATFEAFV
GIRDDEATAQLKMFGDNLQVLEENLPMDNIYKSTDINVAPIRVIKLLYNAGDVKGPQTVAFNLPNDERIVNDRGTSMVMLKNVSDAKFKHILRPIADVCI
SKEQNHLVDFDSFFTHTICHECCHGIGPHTIVLPDGQKSTVRKELQELHSALEEAKADIVGLWALKFMICQDASARFDSAWRKLMGIIRSKHLPLFALSS
FFINLTYNLLDTPRKGEALQFNWLFEKGAFKLHPDETFSVDFAKVDEAVKSLSSEILTIQAKGDKSAASLLLQKYCEMTPPLKLALSKLESIQVPVDIAP
SFPLATELLQQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G79690 ATNUDT3 nudix hydrolase homolog 3 (.1) Lus10002329
[exp]
0 1
AT2G37130 Peroxidase superfamily protein... Lus10015074
[exp]
5.5 0.9203
AT4G32140 EamA-like transporter family (... Lus10006194
[exp]
5.5 0.9166
AT2G37710 RLK receptor lectin kinase (.1) Lus10033776
[exp]
10.5 0.9004
AT3G51630 ATWNK5, ZIK1, W... with no lysine (K) kinase 5 (.... Lus10014165
[exp]
16.2 0.8936
AT1G19130 unknown protein Lus10027661
[exp]
19.4 0.9020
AT1G28340 AtRLP4 receptor like protein 4 (.1) Lus10015417
[exp]
25.6 0.8962
AT1G08920 ESL1 ERD (early response to dehydra... Lus10033814
[exp]
30.8 0.8860
AT5G05320 FAD/NAD(P)-binding oxidoreduct... Lus10034475
[exp]
30.9 0.9018
AT1G10650 SBP (S-ribonuclease binding pr... Lus10030599
[exp]
35.7 0.8675
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10001108
[exp]
37.1 0.8933

Lus10002329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.