Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20300 616 / 0 Protein of unknown function (DUF3537) (.1) AT1G50630 547 / 0 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 412 / 1e-141 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT4G03820 380 / 3e-129 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT2G21080 243 / 6e-76 unknown protein AT1G67570 233 / 1e-71 Protein of unknown function (DUF3537) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009722 [exp] 862 / 0 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 439 / 5e-152 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 402 / 1e-137 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 278 / 3e-89 AT2G21080 450 / 5e-157 unknown protein Lus10011371 [exp] 236 / 8e-73 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 196 / 1e-57 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 180 / 1e-51 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 155 / 5e-43 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10032512 [exp] 56 / 1e-09 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356200 [exp] 620 / 0 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 285 / 5e-92 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 280 / 5e-90 AT2G21080 447 / 9e-156 unknown protein Potri.008G178100 [exp] 236 / 1e-72 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 218 / 5e-66 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 210 / 3e-63 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10002334 pacid=23167896 polypeptide=Lus10002334 locus=Lus10002334.g ID=Lus10002334.BGIv1.0 annot-version=v1.0 ATGGAAGACAGCCTGATCCGTAAAAACAATTACCCCAACTCCGGCGTCGGCACCGGCACCCCCAACAACAACAGATATTCCCGGACCATATCGCACGTCT ACGACGAGCTCCACTCTTTTCGCCGATGCCTACGGTGGATGTGCCTGGACCAGTCCAATATATGGGCTGCATCCATCTCCTGGTTCGTTTTCATCCTCCT CGCCATCGTTGTCCCAGCGATTTCGCATTTCGTCCTCGCCTGCTCCTCCTGCGACAGCACTCACGACCGTCCCTTCGACCCCGTCGTCCAGATCTCTCTC AGCGGCGTCGCCACGCTTTCTTTCCTCTGCCTCTCTAGGTTTATCAGCAAGTATGGCCTCAGGCGCTTTTTGTTCATCGATCGCCTCTGTCACGACAGCG ACACCGTCAGGAAGGGATACACCAAGCAGCTCGATAGATCATTGAAGCTGCTAGCGATCTTCGTGTTGCCATGCTTTCTGGCAGAATCGGGATACAAGAT ATGGTGGTATGCATCTGGTGCTTCTCAGATCCCTTTCTTGAGAAATGTTATCCTTAGTGACACAGTGGCATGTGGGATGGAGCTGCTATCTTGGCTTTAT CGGACAACTATAATCTTCCTTGTCTGCGTTCTTTTCCACCTGATTTGCCAACTTCAGATCTTGCGGCTCCAGGACTTTGCCAAATTTTTCGAAGTTGATT CGGATATGGGCGACGTCTTATTTGAGCATCTAAAGATTAGAAAGCATCTGAGGATCATCAGCCACCGTTATCGGGCATTTGTGCTTTTGGCTTTGGTTAT GGTCACGGGGAGCCAGTTTGCCTCGCTGCTTGCCACCACCAAGCCCACTGCCATTGTTGATATCTACCGTGCTGGAGAACTTGCGCTGTGTTCAATGACA CTTGTGGCGGGTGTCCTGATTCTATTGCGATGTGCGACGAAGATAACGCACAAGGCACAAGCTGTGACAAGCTTAGCTGCTAAGTGGAACGTGTGCGCCA CGCTTGAGCGTTTTGATGCAAACGACGGCGAGACTCCCACAGCTTCGACAGCGGATGGAATTGGAGACTCTGGAACAGAAACTGATGACGCGGGCAACGA AGAGGACGAGTTAGACAATTCCAAAATCATGCATGCTTATGCCTACAGTACCCTCTCGTTCCAGAAGCGACAAGCATTAGTGACATATTTCGAGAACAAC AGGGCAGGAATCACAGTTTATGGATTCACCCTAGATAGGAGCACCCTTCATTCCATTTTTGGCGTTGAACTTGCTCTTGTTCTCTGGTTGCTAGGGAAGA CCGTCGGCATTTCTTGA
AA sequence Show only first row Show all	>Lus10002334 pacid=23167896 polypeptide=Lus10002334 locus=Lus10002334.g ID=Lus10002334.BGIv1.0 annot-version=v1.0 MEDSLIRKNNYPNSGVGTGTPNNNRYSRTISHVYDELHSFRRCLRWMCLDQSNIWAASISWFVFILLAIVVPAISHFVLACSSCDSTHDRPFDPVVQISL SGVATLSFLCLSRFISKYGLRRFLFIDRLCHDSDTVRKGYTKQLDRSLKLLAIFVLPCFLAESGYKIWWYASGASQIPFLRNVILSDTVACGMELLSWLY RTTIIFLVCVLFHLICQLQILRLQDFAKFFEVDSDMGDVLFEHLKIRKHLRIISHRYRAFVLLALVMVTGSQFASLLATTKPTAIVDIYRAGELALCSMT LVAGVLILLRCATKITHKAQAVTSLAAKWNVCATLERFDANDGETPTASTADGIGDSGTETDDAGNEEDELDNSKIMHAYAYSTLSFQKRQALVTYFENN RAGITVYGFTLDRSTLHSIFGVELALVLWLLGKTVGIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	0	1
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10012257 [exp]	2.8	0.8445
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	4.6	0.8732
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	5.7	0.8801
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10019432 [exp]	6.3	0.8427
AT1G21070			Nucleotide-sugar transporter f...		Lus10035824 [exp]	7.5	0.8554
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007799 [exp]	8.5	0.7687
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	9.7	0.8543
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	9.9	0.8749
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020939 [exp]	13.3	0.8406
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	16.6	0.7933

Compare expression of checked genes

Lus10002334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.